CK739617

Overview
NameCK739617
Unique NameCK739617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:33..277. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.205e-26
Identity = 57/60 (95.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:   64 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IFVF
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.639e-24
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 1
Query:   64 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+VKDPN+IF F
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.989e-15
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 1
Query:   64 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP +IF+F
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   64 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY V  P+ +FVF
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
BLAST of CK739617 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.510e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1
Query:   79 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 243
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY    P+ IFVF
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVF 58          
The following BLAST results are available for this feature:
BLAST of CK739617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH8.205e-2695.0040S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH2.639e-2490.0040S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_DICDI4.989e-1560.0040S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_XENLA8.510e-1572.7340S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_SPOFR8.510e-1565.0040S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_RAT8.510e-1572.7340S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB8.510e-1572.7340S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE8.510e-1572.7340S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU8.510e-1572.7340S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN8.510e-1572.7340S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6004 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739617 ID=CK739617; Name=CK739617; organism=Citrus sinensis; type=EST; length=245bp
CCTAGTCGCGCCTCTCGTGCTATATCTTTGTCGAGGATTCAGCAGACTTT
TAACCAACCAACAATGGCGGACAAGGCTGTCACCATTCGAACTAGGAAGT
TCATGACCAACCGTCTCCTTTCCAGGAAGCAATTCGTTATTGATGTTCTT
CATCCTGGCAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAGTTGGC
AAGGATGTATGATGTGAAGGACCCCAACTCAATCTTTGTTTTTAA
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