CK739620
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.640e-45 Identity = 99/156 (63.46%), Postives = 109/156 (69.87%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MATSAI+QSAFAGQTAL+ NE VRK+G +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ W L P ILSKNGVKFGEAVWFKAG+Q + L L P Sbjct: 1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 3.654e-45 Identity = 95/156 (60.90%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MATSAIQQSAFAGQTAL+QSNE V K+G GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDT + P +++ W L P ILSKNGVKFGEAVWFKAG+Q + L L P Sbjct: 1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 6.233e-45 Identity = 99/156 (63.46%), Postives = 107/156 (68.59%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MATSAIQQSAFAGQTAL+ NE VRK+G GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ W L P ILSKNGV FGEAVWFKAG+Q + L L P Sbjct: 1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 1.535e-43 Identity = 92/156 (58.97%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MATS IQQSAFAGQT L+ NE VRKVG +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P +++ W L P +L+KNGVKFGEAVWFKAG+Q + L L P Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNP 148
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.619e-43 Identity = 95/156 (60.90%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MATSAIQQSAF G+T LRQ NEF+RK G R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDT + P E AR +++ S W L P +L KNGVKFGEAVWFKAG+Q + L L P Sbjct: 1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNP 149
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.619e-43 Identity = 96/156 (61.54%), Postives = 104/156 (66.67%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MAT AIQQSAF GQ + NEF+RKVG GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ W L P ILSKNGVKFGEAVWFKAG+Q + L L P Sbjct: 1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.300e-42 Identity = 93/156 (59.62%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MA SAIQ SAFAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDT + P +++ S W L P +LSKNGV+FGEAVWFKAGAQ + L L P Sbjct: 1 MAASAIQSSAFAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------AKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNP 148
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.139e-38 Identity = 94/156 (60.26%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ S W L P ILSKNGVKFGEAVWFKAGAQ + L L P Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.139e-38 Identity = 94/156 (60.26%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 39 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MA SA+ Q+ TA R+ +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDT + P E AR +++ S W L P ILSKNGVKFGEAVWFKAGAQ + L L P Sbjct: 1 MAASALHQTTSFLGTAPRR-DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADP-----ETFARN--RELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNP 147
BLAST of CK739620 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.651e-38 Identity = 90/158 (56.96%), Postives = 102/158 (64.56%), Query Frame = 3 Query: 39 MAT-SAIQQSAFAGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTRWFISRPRDIC*EP*ARGDPQQMGNAWSSWLRL-------P*ILSKNGVKFGEAVWFKAGAQYSLKVALTILATP 485 MAT SAIQ S+ AGQT LR Q NE V+KVG A RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDT + P +++ W L P +L+KNG+KFGEAVWFKAGAQ + L P Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETF-------AKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNP 150 The following BLAST results are available for this feature:
BLAST of CK739620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739620 ID=CK739620; Name=CK739620; organism=Citrus sinensis; type=EST; length=520bpback to top |