CK739622

Overview
NameCK739622
Unique NameCK739622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig983 contig Csv1_Contig983:104..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.027e-31
Identity = 68/139 (48.92%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 AIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN 417
            AI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DMD++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF EA+   P              E+L  VG  C  +++ KLN
Sbjct:   36 AIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLN 173          
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.103e-28
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 AIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKI 444
            AI++L +AQ+VC  W R+C DP+MWR ID+ N  D     +DLE MCRHAVDRS+G L+ I I Y+GT++L+ YIA           V C+ I+D+G  +A+   P              E+L  +G  CP L++ KLN    R P+I
Sbjct:  198 AIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEI 341          
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.117e-20
Identity = 56/146 (38.36%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 AIDVLTSAQRVCSSWLRICHDPAMWRNIDM---HNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQE-ALEAVGSLCPLLRSFKLNNRG 426
            AI++L +AQRVC SW R+C DP+MWR ID+    NL +  ++ + +E +C  AVD S G LL INI+Y      L YIA           V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G
Sbjct:   38 AIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTG 183          
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.763e-19
Identity = 52/140 (37.14%), Postives = 73/140 (52.14%), Query Frame = 1
Query:    7 DVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRG 426
            D+L +A+++C +W RIC DP+MWR I   NL D    + D E MCRH VD S G LL INIE+F +D LL YI                 ++++G    I+  P              + L+A+G  CP L++ KLN+ G
Sbjct:   59 DILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLG 194          
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.842e-16
Identity = 54/146 (36.99%), Postives = 71/146 (48.63%), Query Frame = 1
Query:    7 DVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI-EYFGTDELLQYIAXXXXXXXXXXXVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCP 438
            D+L +AQ+VC  W RIC DP+MWR I   N  D    + D   MCRH VD S G LL IN+ E+F +D LL YI              C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P
Sbjct:   65 DILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLG--MCFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWP 204          
BLAST of CK739622 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.473e-15
Identity = 49/139 (35.25%), Postives = 69/139 (49.64%), Query Frame = 1
Query:    4 IDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKL 414
            +++L +A++VC SW R+  DP +WR IDM NL  L+ + + +E  CRH VD S G LL  NI+   F T  LL Y+A           V    I+  G  EAI   P             +E  + +G  CP L++ KL
Sbjct:   45 LEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMA-ERSSNLRRLRVKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKL 181          
The following BLAST results are available for this feature:
BLAST of CK739622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SKI19_ARATH2.027e-3148.92F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH6.103e-2841.22Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FBL9_ARATH6.117e-2038.36Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
FB221_ARATH6.763e-1937.14Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL21_ARATH1.842e-1636.99Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL22_ARATH3.473e-1535.25Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6009 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739622 ID=CK739622; Name=CK739622; organism=Citrus sinensis; type=EST; length=446bp
GCCATCGATGTGCTGACGAGCGCGCAACGTGTGTGCTCTTCTTGGCTGAG
GATCTGCCACGATCCCGCCATGTGGCGGAACATTGACATGCACAACTTAG
GAGATTTGTGGGACATGGACCATGACTTGGAGAAGATGTGCCGCCACGCT
GTTGACCGTAGCAACGGCCAATTGCTTTCCATCAATATCGAGTACTTCGG
TACCGATGAGCTTCTCCAATACATCGCTAATAGGTCAAGGAATCTCAGGA
ATCTCAGACTTGTGTCATGTTATAACATTTCAGACCAAGGATTTTGTGAA
GCTATTAAAGGGTTTCCACTGCTCGAGGAGCTTGAACTTTCATACTGCTC
ATTATCACAAGAAGCATTGGAAGCTGTTGGGAGCCTTTGCCCACTTCTGA
GATCATTTAAATTGAACAACCGGGGTCACAGGTGCCCAAAAATAGA
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