CK739624

Overview
NameCK739624
Unique NameCK739624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length162
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7118 contig Csv1_Contig7118:331..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739624 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 7.697e-11
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:    2 GGVIPIHTHPAASEILLVVHGCITAGFISSSA 97
            GGV+P+HTHPAASE+L V  G + AGFI+SS+
Sbjct:   98 GGVVPLHTHPAASELLFVTQGTVAAGFITSSS 129

HSP 2 Score: 34.6538 bits (78), Expect = 7.697e-11
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 3 
Query:   99 NTVYVKTLKKGDIMIFPQG 155
            NTVY +TL  GDIM+FPQG
Sbjct:  130 NTVYTRTLYAGDIMVFPQG 148
The following BLAST results are available for this feature:
BLAST of CK739624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GL814_ORYSJ7.697e-1165.63Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6011 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739624 ID=CK739624; Name=CK739624; organism=Citrus sinensis; type=EST; length=162bp
GGGTGGCGTAATCCCAATCCACACTCATCCAGCTGCTTCCGAAATCCTTC
TTGTTGTGCATGGCTGCATAACTGCCGGGTTCATTTCCTCTTCAGCCTAA
CACTGTTTACGTAAAGACGCTTAAGAAGGGAGATATCATGATCTTTCCAC
AAGGGTGTGTGT
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