CK739626

Overview
NameCK739626
Unique NameCK739626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1422 contig Csv1_Contig1422:1..417. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: GPN1_DICDI (GPN-loop GTPase 1 homolog OS=Dictyostelium discoideum GN=xab1 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 5.835e-56
Identity = 97/136 (71.32%), Postives = 119/136 (87.50%), Query Frame = 3
Query:    9 NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            NIDIRDT+ YKEVMKQFNLGPNGGI+TSLNLF+TKFD+ + ++E+R+  LDY+++DTPGQIE+FTWSASG IITE  AS+FPTV  YVVDTPR+ +P TFMSNMLYACSI+YK++LP+V+AFNK D+  H FA EW
Sbjct:   82 NIDIRDTVNYKEVMKQFNLGPNGGIVTSLNLFSTKFDKVLEIVEKRSSSLDYIILDTPGQIEVFTWSASGTIITELMASSFPTVLVYVVDTPRTVDPTTFMSNMLYACSIMYKSKLPMVVAFNKIDITNHRFAEEW 217          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: GPN1_MOUSE (GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 5.462e-54
Identity = 96/137 (70.07%), Postives = 115/137 (83.94%), Query Frame = 3
Query:    6 ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            ANIDIRDT++YKEVMKQ+ LGPNGGI+TSLNLF T+FD+ +  IE+  +   YVL+DTPGQIE+FTWSASG IITEA AS+FPTV  YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H FA+EW
Sbjct:   66 ANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNTFRYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEW 202          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: GPN1_HUMAN (GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 7.133e-54
Identity = 96/137 (70.07%), Postives = 115/137 (83.94%), Query Frame = 3
Query:    6 ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            ANIDIRDT++YKEVMKQ+ LGPNGGI+TSLNLF T+FD+ +  IE+  +   YVL+DTPGQIE+FTWSASG IITEA AS+FPTV  YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H FA+EW
Sbjct:   66 ANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEW 202          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: GPN1_BOVIN (GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 9.316e-54
Identity = 95/137 (69.34%), Postives = 115/137 (83.94%), Query Frame = 3
Query:    6 ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            ANIDIRDT++YKEVMKQ+ LGPNGGI+TSLNLF T+FD+ +  IE+  +   YVL+DTPGQIE+FTWSASG IITEA AS+FPT+  YV+DT RS NP+TFMSNMLYACSILYKT+LP ++  NKTD+  H FA+EW
Sbjct:   66 ANIDIRDTVKYKEVMKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTIVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEW 202          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: NPA3_YEAST (GTPase NPA3 OS=Saccharomyces cerevisiae GN=NPA3 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.652e-51
Identity = 91/137 (66.42%), Postives = 116/137 (84.67%), Query Frame = 3
Query:    6 ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            ANIDIRD+I+YK+VM+ + LGPNG I+TSLNLF+TK D+ I L+E++ D     ++DTPGQIE F WSASGAIITE+FAS+FPTV  Y+VDTPR+++P TFMSNMLYACSILYKT+LP+++ FNKTDV + +FA EW
Sbjct:   50 ANIDIRDSIKYKKVMENYQLGPNGAIVTSLNLFSTKIDQVIRLVEQKKDKFQNCIIDTPGQIECFVWSASGAIITESFASSFPTVIAYIVDTPRNSSPTTFMSNMLYACSILYKTKLPMIVVFNKTDVCKADFAKEW 186          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: NPA3_SCHPO (GTPase npa3 OS=Schizosaccharomyces pombe GN=npa3 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.392e-49
Identity = 89/137 (64.96%), Postives = 114/137 (83.21%), Query Frame = 3
Query:    6 ANIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            ANIDIRDTI YKEVMKQ+NLGPNGGI+TSLNLF TKFD+ + ++E+RA  +D++L+DTPGQIEIF WSASG+II +  AS++PT   YVVDTPR+ +  T+MS+MLYACS+LYK +LPL++ +NK DV   EFA +W
Sbjct:   55 ANIDIRDTINYKEVMKQYNLGPNGGIMTSLNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTCIAYVVDTPRATSTSTWMSSMLYACSMLYKAKLPLIIVYNKCDVQDSEFAKKW 191          
BLAST of CK739626 vs. ExPASy Swiss-Prot
Match: GPN1_CAEEL (GPN-loop GTPase 1 homolog OS=Caenorhabditis elegans GN=gop-2 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.103e-46
Identity = 83/136 (61.03%), Postives = 108/136 (79.41%), Query Frame = 3
Query:    9 NIDIRDTIRYKEVMKQFNLGPNGGILTSLNLFTTKFDEGISLIERRADHLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVGTYVVDTPRSANPMTFMSNMLYACSILYKTRLPLVLAFNKTDVAQHEFALEW 416
            N+DIRDT++YKEVMK+F +GPNG I+T LNL  T+FD+ I LI +R+      L+DTPGQIE FTWSASG+IIT++ AS+ PTV  Y+VD+ R+ NP TFMSNMLYACSILY+T+LP ++ FNK D+ +  FAL+W
Sbjct:   78 NVDIRDTVKYKEVMKEFGMGPNGAIMTCLNLMCTRFDKVIELINKRSSDFSVCLLDTPGQIEAFTWSASGSIITDSLASSHPTVVMYIVDSARATNPTTFMSNMLYACSILYRTKLPFIVVFNKADIVKPTFALKW 213          
The following BLAST results are available for this feature:
BLAST of CK739626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GPN1_DICDI5.835e-5671.32GPN-loop GTPase 1 homolog OS=Dictyostelium discoid... [more]
GPN1_MOUSE5.462e-5470.07GPN-loop GTPase 1 OS=Mus musculus GN=Gpn1 PE=1 SV=... [more]
GPN1_HUMAN7.133e-5470.07GPN-loop GTPase 1 OS=Homo sapiens GN=GPN1 PE=1 SV=... [more]
GPN1_BOVIN9.316e-5469.34GPN-loop GTPase 1 OS=Bos taurus GN=GPN1 PE=2 SV=1[more]
NPA3_YEAST5.652e-5166.42GTPase NPA3 OS=Saccharomyces cerevisiae GN=NPA3 PE... [more]
NPA3_SCHPO1.392e-4964.96GTPase npa3 OS=Schizosaccharomyces pombe GN=npa3 P... [more]
GPN1_CAEEL1.103e-4661.03GPN-loop GTPase 1 homolog OS=Caenorhabditis elegan... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6013 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739626 ID=CK739626; Name=CK739626; organism=Citrus sinensis; type=EST; length=417bp
TTGCTGCCAACATTGATATAAGAGATACAATTCGATATAAGGAAGTGATG
AAGCAGTTCAATCTTGGACCTAATGGTGGAATTCTGACTTCGCTTAACCT
GTTTACAACAAAGTTTGATGAGGGTATTTCGTTGATTGAGAGGCGGGCAG
ATCATCTTGATTATGTTCTCGTGGATACTCCTGGTCAAATTGAGATCTTT
ACTTGGTCTGCTTCGGGAGCCATTATTACAGAAGCTTTTGCTTCAACCTT
TCCAACTGTGGGTACTTACGTAGTTGATACACCTCGTTCGGCAAACCCAA
TGACGTTTATGAGCAATATGCTTTATGCTTGTAGCATCCTGTACAAGACA
CGATTGCCTCTTGTGCTGGCGTTTAACAAGACTGATGTGGCTCAACATGA
GTTTGCTTTAGAGTGGA
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