CK739632

Overview
NameCK739632
Unique NameCK739632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:321..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 2.215e-55
Identity = 103/130 (79.23%), Postives = 113/130 (86.92%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            KTPRGLRSLN+VWAQHLSEEVRRRFYKNWC            +Y++D GKK IQ QLEK+KKYAS+VRV+AHTQIRKMKGLKQKKAHLMEIQ+NGGTIA+KVDY Y FFEK+IPVDAVFQKDEMIDIIGV
Sbjct:   94 KTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGV 223          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 213.772 bits (543), Expect = 2.215e-55
Identity = 102/130 (78.46%), Postives = 115/130 (88.46%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            KTPRGLRSLNTVWAQHLSEEVRRRFYKNW             QY++++GKK IQAQLEK+KKYA+V+RVLAHTQIRKMKGLKQKKAH+MEIQ+NGGTIA+KVD+AY FFEKQIP++AVFQKDEMIDIIGV
Sbjct:   94 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGV 223          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 200.29 bits (508), Expect = 2.534e-51
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            KTPRGLRSL TVWAQHLSEE+RRRFYKNW             ++ET+EGKK IQ+QLEK+KKY SV+RVLAHTQIRKMKGLKQKKAHL EIQ+NGG IA+KVDYA   FEKQ+PVDA+FQKDEMIDIIGV
Sbjct:   94 KTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGV 223          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.104e-38
Identity = 80/130 (61.54%), Postives = 99/130 (76.15%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  SI  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQVNGG++A+KVD+A   FEK I +D++F+KDEMID+I V
Sbjct:   94 ETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENGA-SITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFARNLFEKPIEIDSIFEKDEMIDVIAV 221          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.157e-38
Identity = 75/130 (57.69%), Postives = 100/130 (76.92%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLS+EV+RRFYKNW             ++  + G  +I  +LE+IKKY +VVRVLAHTQIRK   LKQKKAHLMEIQ+NGG++A+KV++ +G FEK + +D++F+KDE+ID+I V
Sbjct:   94 ETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYVKKHSDNNGA-AITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAV 221          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.059e-37
Identity = 73/129 (56.59%), Postives = 96/129 (74.42%), Query Frame = 3
Query:    6 TPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            TPRG R   TVWA+HLSE+ R RFYKNW             +++ ++G+KSI+A L K+KKY S +RV+AHTQ++ MK  ++KKAH+MEIQ+NGGT+AEKVD+A    EKQ+PVD+VF +DEMID IGV
Sbjct:   95 TPRGPRQFKTVWAEHLSEDCRGRFYKNWHTSKKKAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMKH-REKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGV 222          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.350e-36
Identity = 78/130 (60.00%), Postives = 97/130 (74.62%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGV
Sbjct:   94 ETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGV 220          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.350e-36
Identity = 78/130 (60.00%), Postives = 97/130 (74.62%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLSEEV+RRFYKNW             +Y   E  +SI  +LE+IKKY SVVRVLAHTQIRK   L QKKAHLMEIQVNGG++A+KV++A   FEK + + + F+++EMID+IGV
Sbjct:   94 ETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYA--ESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGV 220          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.302e-36
Identity = 77/130 (59.23%), Postives = 96/130 (73.85%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLSEEVRRRFYKNW             +Y  D  +  ++ +L +IKKYASVVRVLAHTQI+K   L QKKAHL EIQVNGG++++KVD+A   FEK + VD+VF+KDEM+D+  V
Sbjct:   94 ETPRGLRSLTTVWAEHLSEEVRRRFYKNWYKSKKKAFTKYSAKYAQDGAQ--VERELARIKKYASVVRVLAHTQIKKTP-LAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSVDSVFEKDEMVDVAAV 220          
BLAST of CK739632 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 145.591 bits (366), Expect = 7.407e-35
Identity = 77/130 (59.23%), Postives = 94/130 (72.31%), Query Frame = 3
Query:    3 KTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGV 392
            +TPRGLRSL TVWA+HLS+EV+RRFYKNW             +Y  D     I+ +L +IKKYASVVRVL HTQIRK   L QKKAHL EIQ+NGG+I+EKVD+A   FEK + VD+VF+++EMID I V
Sbjct:   94 ETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYSAKYAQDGA--GIERELARIKKYASVVRVLVHTQIRKTP-LAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAV 220          
The following BLAST results are available for this feature:
BLAST of CK739632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ2.215e-5579.2360S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH2.215e-5578.4660S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH2.534e-5175.3860S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_ASPFU1.104e-3861.5460S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_NEUCR7.157e-3857.6960S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_TOXCA6.059e-3756.5960S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3B_SCHPO1.350e-3660.0060S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.350e-3660.0060S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_DEBHA2.302e-3659.2360S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_YEAST7.407e-3559.2360S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6019 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739632 ID=CK739632; Name=CK739632; organism=Citrus sinensis; type=EST; length=394bp
TGAAGACACCTCGTGGTCTTCGCTCTTTGAACACTGTATGGGCTCAGCAT
CTTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGAACTGGTGCAAATCCAA
GAAGAAGGCTTTCACAAAATACTCAAAGCAGTATGAGACAGATGAAGGGA
AGAAAAGTATCCAAGCTCAGCTGGAGAAGATCAAGAAGTATGCATCTGTT
GTTCGTGTTCTTGCTCACACTCAGATTAGGAAAATGAAGGGTTTGAAGCA
GAAGAAGGCACACCTGATGGAAATCCAGGTCAATGGTGGCACCATTGCTG
AAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAATTCCTGTTGAT
GCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGTGTCAC
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