CK739685

Overview
NameCK739685
Unique NameCK739685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ARATH (Dihydroorotate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=PYRD PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 8.822e-56
Identity = 108/143 (75.52%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDLS+ +LEDIAAVA+AL LDGLIISNTT+SRPD VSNNPVA ET             N+L++MY LTRGKIPLIGCGG+SSGEDAY+KIRAGATLVQLYT FAYGGPALIPQIK EL +CL+RDGFKSI EA+GAD+R
Sbjct:  318 VKIAPDLSRGELEDIAAVALALHLDGLIISNTTVSRPDAVSNNPVATETGGLSGKPLFALSTNMLRDMYTLTRGKIPLIGCGGVSSGEDAYKKIRAGATLVQLYTGFAYGGPALIPQIKEELVKCLERDGFKSIHEAIGADHR 460          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_AZOC5 (Dihydroorotate dehydrogenase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pyrD PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 75/143 (52.45%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VK+APDL    LE +A V + L +DG+I+ NTTISRPD + +     ET               L  +Y L RG+IPL+G GGI+SG DAY KIRAGA+LVQLY+A  + GPAL+P+IKA+LA  LK DGF+S+ +AVGAD R
Sbjct:  215 VKVAPDLDDAGLEAVAEVTLELGVDGIIMGNTTISRPDSLRSRHKG-ETGGLSGAPLFTLSTERLGALYRLVRGRIPLVGAGGIASGADAYAKIRAGASLVQLYSALVFHGPALVPRIKADLAARLKADGFRSVADAVGADIR 356          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_HUMAN (Dihydroorotate dehydrogenase, mitochondrial OS=Homo sapiens GN=DHODH PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.049e-32
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D EDIA+V   L +DGLI++NTT+SRP  +    +  ET               ++EMY LT+G++P+IG GG+SSG+DA  KIRAGA+LVQLYTA  + GP ++ ++K EL   LK  GF  + +A+GAD+R
Sbjct:  253 VKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQG-ALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHR 394          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PONAB (Dihydroorotate dehydrogenase, mitochondrial OS=Pongo abelii GN=DHODH PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.790e-32
Identity = 69/143 (48.25%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D EDIA+V   L +DGLI++NTT+SRP  +    +  ET               ++EMY LT+G++P+IG GG+SSG+DA  KIRAGA+LVQLYTA  + GP ++ ++K EL   LK  GF  + +A+GAD+R
Sbjct:  253 VKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQG-ALRSETGGLSGKPPRDLSTETIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFCRVTDAIGADHR 394          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RAT (Dihydroorotate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dhodh PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.988e-32
Identity = 70/143 (48.95%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D EDIA+VA  L +DGLI++NTT+SRP  +    +  ET               ++EMY LT+G+IP+IG GG+SSG+DA  KI+AGA+LVQLYTA  + GP ++ ++K EL   LK  GF ++ +A+GAD+R
Sbjct:  253 VKIAPDLTAQDKEDIASVARELGIDGLIVTNTTVSRPVGLQG-ALRSETGGLSGKPLRDLSTQTIREMYALTQGRIPIIGVGGVSSGQDALEKIQAGASLVQLYTALIFLGPPVVVRVKRELEALLKERGFTTVTDAIGADHR 394          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_MOUSE (Dihydroorotate dehydrogenase, mitochondrial OS=Mus musculus GN=Dhodh PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 8.884e-32
Identity = 70/143 (48.95%), Postives = 96/143 (67.13%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D EDIA+VA  L +DGLII+NTT+SRP  +    +  ET               ++EMY LT+G IP+IG GG+SSG+DA  KI+AGA+LVQLYTA  + GP ++ ++K EL   LK  GF ++ +A+G D+R
Sbjct:  253 VKIAPDLTAQDKEDIASVARELGIDGLIITNTTVSRPVGLQG-ALRSETGGLSGKPLRDLSTQTIREMYALTQGTIPIIGVGGVSSGQDALEKIQAGASLVQLYTALTFLGPPVVARVKRELEALLKERGFNTVTDAIGVDHR 394          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_BOVIN (Dihydroorotate dehydrogenase, mitochondrial OS=Bos taurus GN=DHODH PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.979e-31
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            VKIAPDL+ +D EDIA+V   L +DGLI++N+T+SRP  +    +  E                ++EMY LT+G++P++G GG+SSG+DA  KIRAGA+LVQLYTA  Y GP ++  +K EL   LK  GF  + +A+GAD+R
Sbjct:  253 VKIAPDLTAQDKEDIASVVRELGIDGLIVTNSTVSRPASLQG-ALRSEPGGLSGKPLRDLSTQTIREMYALTQGRVPIVGVGGVSSGQDALEKIRAGASLVQLYTALTYRGPPVVGGVKRELEALLKEQGFARVTDAIGADHR 394          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_RHORT (Dihydroorotate dehydrogenase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=pyrD PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.585e-31
Identity = 69/143 (48.25%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR 429
            +K+APDL+ ED+ DIA VA+   LDGLI +NTTI+RP  + ++  A ET              ++  +Y LT+G +PLIG GGI  G +AY +IRAGA+L+Q+Y+A  Y GP L+ +IK +LA+ L+ DGF S+ EAVGAD+R
Sbjct:  211 LKVAPDLTDEDMADIAEVALGGGLDGLICTNTTIARPKSLVSDH-AGETGGLSGLPLRYRARQVIARLYGLTKGALPLIGVGGIGDGAEAYARIRAGASLIQIYSALVYEGPGLVGRIKRDLAQRLRADGFASVAEAVGADHR 352          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_PARL1 (Dihydroorotate dehydrogenase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=pyrD PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.409e-31
Identity = 75/141 (53.19%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGAD 423
            +KIAPDL+ E+L DIA VA+   LDGLI+SNTTI+R   VS    A ET              +L++MY LT G++PL+G GGISS +DAY KIRAGA+LVQLY+A  Y GP L+ +IK  LA  L  DGF  + +AVGAD
Sbjct:  206 LKIAPDLNAEELGDIAEVALEQGLDGLIVSNTTIAREGLVSGVN-ANETGGLSGAPLFPMSTAVLRDMYRLTGGRLPLVGVGGISSADDAYAKIRAGASLVQLYSALTYDGPPLVARIKQGLAARLAADGFAHLKDAVGAD 345          
BLAST of CK739685 vs. ExPASy Swiss-Prot
Match: PYRD_ANADF (Dihydroorotate dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pyrD PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.493e-28
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 VKIAPDLSKEDLEDIAAVAVALRLDGLIISNTTISRPDPVSNNPVAKETXXXXXXXXXXXXNNILKEMYLLTRGKIPLIGCGGISSGEDAYRKIRAGATLVQLYTAFAYGGPALIPQIKAELAECLKRDGFKSIIEAVGADYR*LRRA 444
            VK+APDLS   L++   VA+   + G++ +NTT+SR   V  +P A+E              ++++  Y+   G++P++GCGG+ + E AY KIRAGATLVQ+YT   YGGP  + ++   LA  L RDGF+++ EAVGAD     RA
Sbjct:  215 VKLAPDLSPTALDEAVDVAIDAGVSGIVATNTTLSRAG-VERHPRAREAGGLSGAPLEALATSVVRRCYIRAAGRVPIVGCGGVMNAEGAYAKIRAGATLVQVYTGLVYGGPGFVRRLNDGLARLLARDGFRTVAEAVGADVETAERA 361          
The following BLAST results are available for this feature:
BLAST of CK739685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
PYRD_ARATH8.822e-5675.52Dihydroorotate dehydrogenase, mitochondrial OS=Ara... [more]
PYRD_AZOC52.114e-3352.45Dihydroorotate dehydrogenase OS=Azorhizobium cauli... [more]
PYRD_HUMAN1.049e-3248.25Dihydroorotate dehydrogenase, mitochondrial OS=Hom... [more]
PYRD_PONAB1.790e-3248.25Dihydroorotate dehydrogenase, mitochondrial OS=Pon... [more]
PYRD_RAT3.988e-3248.95Dihydroorotate dehydrogenase, mitochondrial OS=Rat... [more]
PYRD_MOUSE8.884e-3248.95Dihydroorotate dehydrogenase, mitochondrial OS=Mus... [more]
PYRD_BOVIN1.979e-3146.85Dihydroorotate dehydrogenase, mitochondrial OS=Bos... [more]
PYRD_RHORT2.585e-3148.25Dihydroorotate dehydrogenase OS=Rhodospirillum rub... [more]
PYRD_PARL14.409e-3153.19Dihydroorotate dehydrogenase OS=Parvibaculum lavam... [more]
PYRD_ANADF3.493e-2841.22Dihydroorotate dehydrogenase OS=Anaeromyxobacter s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6072 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739685 ID=CK739685; Name=CK739685; organism=Citrus sinensis; type=EST; length=488bp
GTGAAAATTGCTCCAGACTTGTCCAAGGAAGACCTTGAGGATATTGCTGC
AGTTGCTGTTGCACTCCGCTTAGATGGATTGATCATATCAAATACAACTA
TTTCAAGACCAGATCCTGTCAGTAACAACCCAGTGGCTAAGGAAACTGGT
GGTTTAAGCGGGAAACCTCTGTTGAGTTTGTCAAACAATATCTTAAAGGA
GATGTATCTCTTGACAAGGGGAAAGATTCCTCTAATTGGCTGCGGGGGTA
TTAGCAGTGGAGAGGATGCTTACAGAAAGATACGAGCTGGAGCAACTCTT
GTTCAGCTTTACACAGCATTTGCCTATGGGGGACCAGCTCTTATTCCTCA
AATAAAGGCTGAACTGGCTGAGTGCCTAAAAAGAGATGGTTTTAAGTCTA
TCATTGAGGCAGTAGGTGCAGATTACAGATAATTGCGGCGTGCGTGTTAG
CTCCACAGAATGAATATTGAGCCCCCCTTTTTGATGTG
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