CK739686

Overview
NameCK739686
Unique NameCK739686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4990 contig Csv1_Contig4990:247..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.177e-51
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 1
Query:  157 ATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            A+   D+DLK WD++F+KVDQ TLFDLILAANYLNIK LLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:   86 ASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          

HSP 2 Score: 83.1889 bits (204), Expect = 2.177e-51
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVALESQTIKHMIEDDC DNGIPLPNVTSKILSKVIEYCK+
Sbjct:   22 AVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKR 62          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.840e-51
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 1
Query:  130 VEASKSDDRATSGV---DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            VEA+ S   A  G    DDDLKAWD DF+K+DQATLF+LILAANYLNIK+LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:   63 VEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          

HSP 2 Score: 78.9518 bits (193), Expect = 2.840e-51
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVALESQTI HM+EDDC DNG+PLPNVTSKIL+KVIEYCK+
Sbjct:   21 AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.893e-43
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 1
Query:  133 EASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            EA    D   S  +D+LK WD++FVKVDQ TLFDLILAANYLNI  LLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:   70 EAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          

HSP 2 Score: 78.1814 bits (191), Expect = 1.893e-43
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA++SQTIKHMIEDDCADNGIPLPNVT  IL+KVIEYCKK
Sbjct:   23 AVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.711e-42
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSLLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   65 DEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          

HSP 2 Score: 67.0106 bits (162), Expect = 7.711e-42
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct:   21 AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.706e-41
Identity = 58/88 (65.91%), Postives = 67/88 (76.14%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D A    ++DL  WD  F+ ++Q+T+F+LILAANYLNIKSL DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:   65 DEANPISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          

HSP 2 Score: 67.0106 bits (162), Expect = 1.706e-41
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA++SQTI HM+EDDC  +GIPL NV SKIL KVIEYCKK
Sbjct:   21 AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.895e-41
Identity = 53/94 (56.38%), Postives = 64/94 (68.09%), Query Frame = 1
Query:  133 EASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            EA    D   S  + +LK WD DFVKVD  TLFDL+ AANYLNI  LLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:   70 EAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          

HSP 2 Score: 78.1814 bits (191), Expect = 2.895e-41
Identity = 36/41 (87.80%), Postives = 38/41 (92.68%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA+ESQTIKHMIEDDC DNGIPLPNVT  IL+KVIEYCKK
Sbjct:   23 AVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.526e-36
Identity = 52/90 (57.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKV--DQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D  T    D+LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:   65 DSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          

HSP 2 Score: 68.1662 bits (165), Expect = 2.526e-36
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA++SQTI HMIEDDC  NG+P+ NVT  ILSKVIEYCKK
Sbjct:   20 AVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKK 60          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.234e-35
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D A    DDDLK WD +F++ D +T+FDLI AANYLNIKSL DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:   66 DAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          

HSP 2 Score: 57.3806 bits (137), Expect = 1.234e-35
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 3
Query:   27 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            I HM E+DC DNGIPLPNVT KIL+ VIEYC K
Sbjct:   30 IAHMSENDCTDNGIPLPNVTGKILAMVIEYCNK 62          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.553e-35
Identity = 52/88 (59.09%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  151 DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D A    D+DLK WD +F++  Q+T+FDLI+AANYLNIKSLLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:   65 DAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          

HSP 2 Score: 62.003 bits (149), Expect = 3.553e-35
Identity = 28/39 (71.79%), Postives = 29/39 (74.36%), Query Frame = 3
Query:    9 ALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            A + QTI HM EDDC DNGIPLP VT KIL  VIEYC K
Sbjct:   23 ACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61          
BLAST of CK739686 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.019e-32
Identity = 51/81 (62.96%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  175 DDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 414
            D+ K WD +F+K  DQ T+F L+LAANYLNIK LLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:   69 DEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          

HSP 2 Score: 55.0694 bits (131), Expect = 2.019e-32
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 3
Query:    3 AVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKK 125
            AVA + + ++HMIEDDC    +PL NVT KILS V+EYCKK
Sbjct:   21 AVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKK 61          
The following BLAST results are available for this feature:
BLAST of CK739686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH2.177e-5176.74SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH2.840e-5173.47SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH1.893e-4360.64SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH7.711e-4267.05SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.706e-4165.91SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK3_ARATH2.895e-4156.38SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK13_ARATH2.526e-3657.78SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH1.234e-3560.23SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK10_ARATH3.553e-3559.09SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK14_ARATH2.019e-3262.96SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6073 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739686 ID=CK739686; Name=CK739686; organism=Citrus sinensis; type=EST; length=421bp
AAGCAGTGGCGTTGGAATCGCAGACCATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACCGTCGAGGCATCTAAGTCCGAC
GATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGA
TTTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAA
ACTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCA
GACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAACAT
CAAGAACGACTTTACCCCAGAAGAGGAGGAAGAGGGTCGTCGGGAGAATC
AGTGGGCTTTTGAGTGAAAGG
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