CK739687

Overview
NameCK739687
Unique NameCK739687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig710 contig Csv1_Contig710:155..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739687 vs. ExPASy Swiss-Prot
Match: Y3972_ARATH (Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.179e-86
Identity = 159/217 (73.27%), Postives = 177/217 (81.57%), Query Frame = 2
Query:    2 FPFTGALQSKSRXXXXXXXXXXXXXXXXXXXYAFSGSGIFGGDKAAVSRIEGDFSCTSEIQRAIPILKKAYGDSMHKVLHVGPDTCSVVSTLLKEEETEAWGVEPYDIEDADARCKSLVHKGIVRVADIKFPLPYRAKSFPLVIGSDALDYLSPKYLNKILPDLARVASDGVLIFAGYPGQQRAKGAELSKFGRPAKMRSSSWWIRYFGQTSLEENE 652
            FPF GAL SKSR                   YA+SG GIF   K  VS++ GD+SCT+E+QRAIP+LKKAYGD M KVLHVGPDTCSVVS+LLKEEETEAWGVEPYDIEDAD+ CKS V KG+VRVADIKFPLPYRAKSF LVI SDALDYLSPKYLNK +P+LARVASDGV++FAG PGQQRAK AELSKFGRPAKMRS+SWW R+F QT+LEEN+
Sbjct:   18 FPFAGALHSKSRSSPLLSICLVLVGACLLIGYAYSGPGIFKSIKE-VSKVTGDYSCTAEVQRAIPVLKKAYGDGMRKVLHVGPDTCSVVSSLLKEEETEAWGVEPYDIEDADSHCKSFVSKGLVRVADIKFPLPYRAKSFSLVIVSDALDYLSPKYLNKTVPELARVASDGVVLFAGLPGQQRAKVAELSKFGRPAKMRSASWWNRFFVQTNLEEND 233          
The following BLAST results are available for this feature:
BLAST of CK739687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3972_ARATH4.179e-8673.27Uncharacterized protein At3g49720 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6074 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739687 ID=CK739687; Name=CK739687; organism=Citrus sinensis; type=EST; length=662bp
CTTTCCTTTTACTGGAGCTTTGCAGTCCAAATCCCGATCTTCACCTCTCC
TATCCGTCGGCCTTGTCCTCGTGGGAGCATTCCTTCTTATCGGCTATGCT
TTCAGCGGCTCGGGTATATTTGGAGGCGATAAAGCAGCTGTTAGTAGGAT
CGAAGGTGACTTTTCTTGCACATCAGAAATCCAAAGAGCTATACCTATTC
TAAAGAAAGCATACGGGGATAGCATGCACAAAGTTTTACACGTGGGTCCT
GATACCTGTTCAGTGGTCTCTACACTGTTGAAAGAAGAGGAAACCGAAGC
ATGGGGTGTGGAACCGTATGACATAGAAGATGCAGATGCTAGGTGCAAGA
GCCTTGTGCATAAAGGCATTGTGCGTGTGGCTGATATCAAGTTCCCCTTG
CCTTACCGGGCAAAGTCCTTTCCTCTTGTTATTGGATCAGATGCTCTGGA
TTACCTGTCCCCAAAATACCTAAACAAGATTCTTCCAGATTTGGCAAGGG
TGGCTTCTGATGGTGTCCTTATTTTTGCAGGGTACCCTGGACAACAAAGA
GCTAAAGGTGCAGAATTATCCAAATTTGGACGGCCGGCAAAAATGAGAAG
CTCCTCTTGGTGGATACGCTATTTTGGTCAGACAAGCTTAGAAGAAAATG
AACCTGCTATGA
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