CK739692

Overview
NameCK739692
Unique NameCK739692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length314
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:359..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.395e-56
Identity = 100/104 (96.15%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 5.791e-56
Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:   89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.564e-56
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.564e-56
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:   89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG 192
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 7.564e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            E FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGG
Sbjct:   98 ENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGG 201
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.879e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.879e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.879e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.879e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 194
[Close]
BLAST of CK739692 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 9.879e-56
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1 
Query:    1 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGG 312
            ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGG
Sbjct:   90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGG 193
The following BLAST results are available for this feature:
BLAST of CK739692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB27_TOBAC3.395e-5696.15Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_MAIZE5.791e-5698.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2G_SOLLC7.564e-5697.12Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC7.564e-5697.12Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2B_PINSY7.564e-5696.15Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_SPIOL9.879e-5696.15Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_TOBAC9.879e-5696.15Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_PETSP9.879e-5696.15Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB24_TOBAC9.879e-5696.15Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC9.879e-5696.15Chlorophyll a-b binding protein 16, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6079 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739692 ID=CK739692; Name=CK739692; organism=Citrus sinensis; type=EST; length=314bp
GAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGC
CATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACG
GAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTC
AGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCCTGATCCACGCTCA
GAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTG
AGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTG
TACCCAGGTGGCAG
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