CK739695

Overview
NameCK739695
Unique NameCK739695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:346..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 6.823e-71
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 3
Query:    3 LGLGNWVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 416
            LGLGNWV AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVIIP+GI P
Sbjct:  108 LGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 1.681e-69
Identity = 120/136 (88.24%), Postives = 127/136 (93.38%), Query Frame = 3
Query:    3 LGLGNWVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 410
            LGLGNWV AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR I
Sbjct:  107 LGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.173e-24
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 3
Query:   18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 389
            W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:  165 WQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.919e-23
Identity = 59/125 (47.20%), Postives = 82/125 (65.60%), Query Frame = 3
Query:   18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 389
            W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K  + ++ EIK+ RLA++ F+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:  162 WQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20
Identity = 52/112 (46.43%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   18 WVHAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 353
            W  A +   V G  ++YLG P+P+ +L T++ IE L + ++E QR+ E DPEK+ YPGG FDPLG + DP+K +  K+ EIK+ RLA++AF+ F + Q+A+ G GP+  LAT
Sbjct:  166 WQDAGKVELVEG--SSYLGQPLPF-SLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFAL-QAAFTGKGPVSFLAT 273          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.553e-19
Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R   + P    E   YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  141 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  V   ++  I   + + +  VE  R     P    E   YPGG+FDPLG + DP+ F E KVKE+KNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:  142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.008e-18
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 3
Query:   54 GQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 380
            G   YLGNP  +   ++  I  ++ + +  VE  R          DP    YPGGAFDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  141 GGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK739695 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 3
Query:   51 GGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEK-DPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 395
            G    Y G  +P   L   +V E + +   E+ R     D E K +PGG FDPLG +KDP++    KVKEIKNGRLA+ A +GF + Q+   G GP+ENLA HL+DP+ NN+  VI
Sbjct:  157 GNTLNYFGKNIPIN-LVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSDPFGNNLLTVI 270          
The following BLAST results are available for this feature:
BLAST of CK739695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB11_SOLLC6.823e-7190.58Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU1.681e-6988.24Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4A_ARATH8.173e-2448.00Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH6.919e-2347.20Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH1.443e-2046.43Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB21_SINAL3.553e-1948.70Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ARATH1.350e-1846.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH1.350e-1846.96Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB21_ORYSJ3.008e-1847.86Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_ARATH3.929e-1845.69Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6082 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739695 ID=CK739695; Name=CK739695; organism=Citrus sinensis; type=EST; length=524bp
CATTGGGATTGGGCAACTGGGTGCATGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGCACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
CAGAGGGATTGTGCCTTGAAGAACTGCATTGTTAAATTATCCAGTCCACT
GTAAAATTCCCTGTTAAAAGAGCCTTTAATGAAACAGAATTCGTATCTTT
CTGACTGTAAAAAAAAAAAAAAAA
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