CK739697

Overview
NameCK739697
Unique NameCK739697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739697 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.041e-69
Identity = 106/135 (78.52%), Postives = 120/135 (88.89%), Query Frame = 2
Query:   92 GR*PRSIDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERGALPPPVYGATTSFHSPKP 496
            G+  RS+DT  G LSPQEQKTVDAIV+AS+LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIM+KN  Q+ KETEFALSALMEIP QYKATIELN+LGRR G +PER  LPPP+ G ++S++SPKP
Sbjct:  253 GQVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKP 387          

HSP 2 Score: 65.4698 bits (158), Expect = 3.041e-69
Identity = 30/34 (88.24%), Postives = 34/34 (100.00%), Query Frame = 1
Query:    1 PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 102
            PTSFAP+I+MAM+IVEQSGGQYHVL+IIADGQVT
Sbjct:  223 PTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVT 256          
BLAST of CK739697 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.046e-66
Identity = 107/134 (79.85%), Postives = 116/134 (86.57%), Query Frame = 2
Query:   92 GR*PRSIDTVRGCLSPQEQKTVDAIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNILGRRKGNVPERGALPPPVYGATTSFHSPK 493
            G+  RS+DT  G LSPQEQKTVDAIVKAS LPLSIVLVGVGDGPWDMM+EFDDNIPARAFDNFQFVNFTEIMSKN DQ+RKETEFALSALMEIP QYKATIELN+LG R GN+P+R  LPPPV    +SF S +
Sbjct:  287 GQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSG-SSFSSSR 419          

HSP 2 Score: 63.929 bits (154), Expect = 1.046e-66
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1
Query:    1 PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 102
            PTSFAP+IEMAM++VEQS GQYHVL+IIADGQVT
Sbjct:  257 PTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVT 290          
BLAST of CK739697 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.918e-26
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 2
Query:  161 AIVKASELPLSIVLVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNHDQTRKETEFALSALMEIPSQYKATIELNIL 409
            AI  AS  PLSI++VGVGDGPW+MM  FDDNIP R FDNF FV+F ++M    +    +  FAL+ALMEIP QYKA  EL +L
Sbjct: 7463 AIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          

HSP 2 Score: 38.891 bits (89), Expect = 3.918e-26
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 1
Query:    1 PTSFAPVIEMAMSIVEQSGGQYHVLLIIADGQVT 102
            PT+F P+I+ A+ I ++    YH+L+I+ADGQVT
Sbjct: 7423 PTNFVPLIDRAIEICKEKHS-YHILVIVADGQVT 7455          
The following BLAST results are available for this feature:
BLAST of CK739697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH3.041e-6978.52E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.046e-6679.85E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL3.918e-2659.04Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6084 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739697 ID=CK739697; Name=CK739697; organism=Citrus sinensis; type=EST; length=498bp
CCGACATCATTTGCCCCCGTCATTGAAATGGCTATGTCTATCGTTGAGCA
GAGTGGTGGCCAGTACCATGTATTATTAATAATTGCCGATGGGCAGGTAA
CCTAGAAGTATTGATACAGTGCGTGGTTGCTTAAGTCCTCAGGAGCAGAA
GACAGTTGATGCAATTGTAAAAGCAAGCGAGCTTCCCTTGTCAATTGTGC
TAGTTGGGGTAGGAGATGGGCCCTGGGACATGATGAAAGAATTTGATGAT
AACATTCCTGCTCGAGCATTTGATAATTTTCAGTTTGTGAATTTTACAGA
AATCATGTCAAAGAATCATGATCAAACTCGAAAGGAGACAGAATTTGCGC
TTTCTGCTTTAATGGAAATTCCTTCTCAGTATAAGGCAACAATAGAGCTT
AACATACTGGGTCGCCGGAAGGGAAATGTTCCAGAGAGGGGTGCCCTCCC
TCCACCTGTATATGGGGCAACCACATCTTTTCACAGCCCAAAACCTTT
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