CK739698

Overview
NameCK739698
Unique NameCK739698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:843..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.241e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            +AGASR+IGIDID KKFD AKNFGVTEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  218 SAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAA 301          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.241e-41
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            +AGASR+IGIDID KKFD AKNFGVTEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  218 SAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAA 301          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.202e-39
Identity = 72/84 (85.71%), Postives = 81/84 (96.43%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            +AGASR+IGIDID  K+D AKNFGVTEF+NPKDH+KPIQQV++DLTDGGVDYSFEC+GNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  215 SAGASRIIGIDIDSNKYDTAKNFGVTEFINPKDHEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAA 298          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.756e-39
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGASRVIGIDID KKFD AKNFGVTEFVNPK+HDKPIQQVLVDLTDGGVDYSFECIGNVS+MRAALEC  KGWGTSVIVGVAA
Sbjct:  218 AAGASRVIGIDIDNKKFDVAKNFGVTEFVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAA 301          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.905e-39
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AGASR+IGIDID KK++ AK FGV EFVNPKDHDKPIQ+V+VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA
Sbjct:  217 AGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.633e-34
Identity = 64/82 (78.05%), Postives = 74/82 (90.24%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AGA+R+IGID++P KF+ AK FG TEFVNPKDH KPIQ+VLV++TDGGVDYSFECIGNV +MRAALE CHKGWG SVI+GVA
Sbjct:  216 AGATRIIGIDLNPAKFETAKEFGATEFVNPKDHSKPIQEVLVEMTDGGVDYSFECIGNVQIMRAALEACHKGWGESVIIGVA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.751e-34
Identity = 63/84 (75.00%), Postives = 75/84 (89.29%), Query Frame = 2
Query:    2 AAGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AAGASR+I ID++P KF  AK FG T+ VNPKDH KP++QVLV++TDGGVDYSFEC+GN++VMRAALE CHKGWGTSVI+GVAA
Sbjct:  214 AAGASRIIAIDVNPDKFRIAKEFGATDLVNPKDHSKPVEQVLVEMTDGGVDYSFECVGNIAVMRAALEACHKGWGTSVIIGVAA 297          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 137.117 bits (344), Expect = 2.607e-32
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AGASR+IG+DI+  KF RAK FG TE +NP+D  KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAA
Sbjct:  214 AGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.585e-32
Identity = 58/82 (70.73%), Postives = 73/82 (89.02%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 250
            AGA+R+IG+DI+P+KF +A  FG TE +NPKDH +P+Q+VLV++TDGGVDYSFECIGNV +MR+ALE CHKGWG SVI+GVA
Sbjct:  215 AGATRIIGVDINPEKFGKAAEFGATECLNPKDHARPVQEVLVEMTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVA 296          
BLAST of CK739698 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.690e-31
Identity = 60/83 (72.29%), Postives = 72/83 (86.75%), Query Frame = 2
Query:    5 AGASRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVLVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 253
            AGASR+IG+DI+  KF +AK FG +E +NP+D  KPIQ+VL+++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAA
Sbjct:  214 AGASRIIGVDINKDKFAKAKEFGASECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA 296          
The following BLAST results are available for this feature:
BLAST of CK739698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADHX_ORYSJ5.241e-4192.86Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI5.241e-4192.86Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_PEA2.202e-3985.71Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_MAIZE3.756e-3992.86Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_ARATH4.905e-3989.16Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_SPAAU1.633e-3478.05Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADHL_GADMO4.751e-3475.00Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_HUMAN2.607e-3274.70Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHH_GADMO7.585e-3270.73Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADHX_HORSE1.690e-3172.29Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6085 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739698 ID=CK739698; Name=CK739698; organism=Citrus sinensis; type=EST; length=255bp
GGCAGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCAAAAAAGT
TTGATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGAC
CATGACAAACCCATTCAGCAGGTCCTTGTCGATCTCACGGATGGTGGTGT
TGACTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTT
TGGAATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCT
GCATC
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