CK739700

Overview
NameCK739700
Unique NameCK739700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7947 contig Csv1_Contig7947:194..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVM 320
            ++F + GA+VV+ADIQ++LG S+V  +G   SSYVHCDVTNE  +  A+D  VA  GKLD+MFNNAG+ G    R+ +  K DFERVL+VN+ G FLG KHAARVM
Sbjct:   35 RLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVM 140          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.184e-17
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSS----YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 323
            ++F + GAKV I D+Q+ LG  V +S+    S     ++H DV  E  I NA+D  V   G LDI+ NNAG+ GA    I +   ++FE    VNV G FL +KHAARVMI
Sbjct:   38 RLFHKHGAKVCIVDLQDDLGGEVCKSLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMI 148          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.158e-17
Identity = 48/111 (43.24%), Postives = 73/111 (65.77%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHG-KLDIMFNNAGIGGANKTR----IIDNEKADFERVLSVNVTGVFLGIKHAARVM 320
            ++FA+ GA+VVIADI +  G ++  ++G    S+V CDV+ E  ++ A+D  ++ HG +LD+  NNAG+ G  +TR    I+  + A+F+RVL VN  G  LG+KHAAR M
Sbjct:   73 RLFAKHGARVVIADIDDAAGEALASALGPQ-VSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLG-RQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAM 181          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: BACC_BACAM (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus amyloliquefaciens GN=bacC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 323
            + F  Q A VV+ADI E  G +++         +V  D+TNE   +NAI   V   G LD++ NNAGI       I + E +D+ +VL+VN+TG+FL  KHA + M+
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVQTDITNEPACQNAILSAVDKFGGLDVLINNAGI--EIVAPIHEMELSDWNKVLNVNLTGMFLMSKHALKYML 127          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 323
            + F  Q A VV+ADI E  G +++         +VH D+T+E   +NAI   V   G LD++ NNAGI       I + E +++ +VL+VN+TG+FL  KHA + M+
Sbjct:   23 QAFLNQQANVVVADIDEAQGEAMIRKENNDRLHFVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGI--EIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYML 127          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMI 323
            + F  Q A VV+ADI E  G ++V         +V  D+T+E+  ++A++  V T G LD++ NNAGI       I + E +D+ +VL VN+TG+FL  KHA + M+
Sbjct:   23 QAFLGQQANVVVADIDEAQGEAMVRKENNDRLHFVQTDITDEAACQHAVESAVHTFGGLDVLINNAGI--EIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHML 127          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 3
Query:    6 VFAQQGAKVVIADIQEQLGHSVVESIGTSNSS--YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIK 302
            + A++GA V ++D+ E+LGH  V  I        ++H DVTNE+H   A+D  +A   +LD + NNAGI      +   NE  +++R+  +NV  VFLG +
Sbjct:   25 LLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSNE--EWDRIFEINVRSVFLGTR 123          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 37/101 (36.63%), Postives = 58/101 (57.43%), Query Frame = 3
Query:    6 VFAQQGAKVVIADIQEQLGHSVVESIGTSNSS--YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIK 302
            + A++GA V ++D+ E+LGH  V  I        ++H DVTNE+H   A+D  +A   +LD + NNAGI      +   NE  +++R+  +NV  VFLG +
Sbjct:   25 LLAREGATVYLSDMNEELGHQAVAEIRRQGGKAHFLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSNE--EWDRIFEINVRSVFLGTR 123          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.260e-12
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVM 320
            +    +GAKVV  DI ++ G +V   +  + + YVH DVT  +    A+D  V   G L ++ NNAGI   N   I D    +++R+L VN+TGVFLGI+   + M
Sbjct:   25 RAMVAEGAKVVFGDILDEEGKAVAAELADA-ARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGI--LNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPM 127          
BLAST of CK739700 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.260e-12
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 3
Query:    3 KVFAQQGAKVVIADIQEQLGHSVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVM 320
            +    +GAKVV  DI ++ G +V   +  + + YVH DVT  +    A+D  V   G L ++ NNAGI   N   I D    +++R+L VN+TGVFLGI+   + M
Sbjct:   25 RAMVAEGAKVVFGDILDEEGKAVAAELADA-ARYVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGI--LNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPM 127          
The following BLAST results are available for this feature:
BLAST of CK739700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MOMAS_ORYSJ3.626e-2957.55Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH3.184e-1744.14Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
TS2_MAIZE4.158e-1743.24Sex determination protein tasselseed-2 OS=Zea mays... [more]
BACC_BACAM1.635e-1339.25Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC2_BACSU1.635e-1338.32Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
BACC_BACSU2.136e-1338.32Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
CPNA_COMTE2.361e-1236.63Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS92.361e-1236.63Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]
HSD_MYCTU5.260e-1237.743-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO5.260e-1237.743-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6087 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739700 ID=CK739700; Name=CK739700; organism=Citrus sinensis; type=EST; length=324bp
CAAAAGTCTTTGCCCAACAGGGTGCCAAAGTTGTCATTGCGGATATTCAG
GAACAATTAGGCCATTCAGTTGTTGAATCCATAGGCACATCAAACTCATC
CTATGTCCATTGCGATGTCACAAACGAATCCCACATTAAAAATGCAATCG
ACCAAACCGTTGCAACTCATGGCAAGCTGGACATAATGTTCAACAACGCC
GGCATAGGCGGCGCTAACAAGACCCGCATAATCGACAATGAAAAGGCCGA
TTTCGAGCGTGTCCTGAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCA
AGCATGCTGCTCGTGTCATGATTC
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