CK739702

Overview
NameCK739702
Unique NameCK739702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12425 contig Csv1_Contig12425:428..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.906e-32
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPGV 210
            EHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISF+ AKPPGV
Sbjct:  111 EHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.868e-30
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   99 EHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.440e-30
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:  100 EHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   38 EHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.187e-30
Identity = 55/69 (79.71%), Postives = 64/69 (92.75%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:   99 EHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            E+H SPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISF+A KP G
Sbjct:  111 ENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.849e-29
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:   10 EHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EHH SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 207
            EHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  111 EHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CK739702 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 EHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 204
            EH +SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  109 EHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of CK739702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RBS_LACSA9.906e-3280.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU1.868e-3081.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT2.440e-3079.71Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS3_WHEAT3.187e-3079.71Ribulose bisphosphate carboxylase small chain clon... [more]
RBS1_WHEAT3.187e-3079.71Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_MUSAC1.211e-2979.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SINAL7.849e-2977.94Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_GLYTA1.025e-2877.94Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.025e-2879.71Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS1A_ARATH1.025e-2877.94Ribulose bisphosphate carboxylase small chain 1A, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6089 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739702 ID=CK739702; Name=CK739702; organism=Citrus sinensis; type=EST; length=374bp
GAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTG
GAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGG
TTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGA
TTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCC
ACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATAT
TGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGG
GGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAA
ACTTTTTTGGTTTTCTCCCAAAAA
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