CK739703

Overview
NameCK739703
Unique NameCK739703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.780e-29
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKDV 197
            FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASR++FRGF WPVAAYREF+NG+L+ KDV
Sbjct:  157 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLIAKDV 221          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.436e-25
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++ RGF WPVAAYRE +NG+LVV D
Sbjct:  167 FLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDD 230          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.155e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 185
            FLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLA++L+FRGFSWPVAAYRE++NGEL+
Sbjct:  168 FLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.087e-25
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 185
            FLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLAS L+FRGFSWPVAAYRE +NGELV
Sbjct:  167 FLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_SYNP6 (Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.096e-17
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVK 191
            FLYIAGWIGWVGRSYL AI  +K  A KEI+IDVPLA +    GF+WP+AA++EF +G+L+ K
Sbjct:   88 FLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_SYNY3 (Photosystem I reaction center subunit III OS=Synechocystis sp. (strain PCC 6803) GN=psaF PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGRSYLI I   K P M+E++I+VPLA + +  GF WP+AA  E+ +G+LV+KD
Sbjct:   94 FLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMKD 157          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_THEEB (Photosystem I reaction center subunit III OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.164e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+YLIA+    +   KEIIIDVPLA + +  GF+WP+AA +E  +GEL  KD
Sbjct:   93 FLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_SYNEN (Photosystem I reaction center subunit III OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.164e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYIAGWIGWVGR+YLIA+    +   KEIIIDVPLA + +  GF+WP+AA +E  +GEL  KD
Sbjct:   93 FLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKD 156          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.103e-17
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELVVKD 194
            FLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G+L+  +
Sbjct:  110 FLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASN 173          
BLAST of CK739703 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 FLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNGELV 185
            FLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G+L+
Sbjct:  114 FLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLI 174          
The following BLAST results are available for this feature:
BLAST of CK739703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSAF_ARATH2.780e-2989.23Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU2.436e-2581.25Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR4.155e-2583.61Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL7.087e-2586.89Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SYNP61.096e-1763.49Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_SYNY31.869e-1760.94Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_THEEB4.164e-1760.94Photosystem I reaction center subunit III OS=Therm... [more]
PSAF_SYNEN4.164e-1760.94Photosystem I reaction center subunit III OS=Synec... [more]
PSAF_PORYE7.103e-1754.69Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_PORPU9.277e-1757.38Photosystem I reaction center subunit III OS=Porph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6090 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739703 ID=CK739703; Name=CK739703; organism=Citrus sinensis; type=EST; length=351bp
TGTTTTTGTACATAGCTGGATGGATCGGGTGGGTTGGCAGGAGCTACTTG
ATCGCCATTAGCGGTGAAAAGAAGCCGGCCATGAAGGAGATCATCATTGA
TGTTCCTTTGGCTTCCAGGTTGGTCTTCAGAGGTTTTAGCTGGCCTGTTG
CTGCTTACAGAGAGTTCGTTAATGGTGAACTTGTTGTCAAGGACGTTTAA
TCATTCTATCTATTTCTATCTCCTCTGGTAATCTCAATTTCTTTGTTGTA
ATTTTTCATTTCCATTTTTATTATGTGTCATGTGTTGTTGCTTACTTGCC
TGTGTAATTTGAGGCCGTGTGATTTATCATGGAATTATCAATTATGGATG
T
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