CK739705

Overview
NameCK739705
Unique NameCK739705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:350..939. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739705 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 9.343e-81
Identity = 128/147 (87.07%), Postives = 140/147 (95.24%), Query Frame = 1
Query:   49 GQWP--AVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 483
            G+W   AV+GIFVGQ WSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  104 GRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250          

HSP 2 Score: 45.8246 bits (107), Expect = 9.343e-81
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3
Query:    3 AFLKWYREAELIHGRWAMA 59
            AFLKWYREAELIHGRWAMA
Sbjct:   91 AFLKWYREAELIHGRWAMA 109          
BLAST of CK739705 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.853e-79
Identity = 126/147 (85.71%), Postives = 140/147 (95.24%), Query Frame = 1
Query:   49 GQWP--AVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 483
            G+W   AV+GIFVGQ W+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  109 GRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255          

HSP 2 Score: 44.2838 bits (103), Expect = 3.853e-79
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 3
Query:    3 AFLKWYREAELIHGRWAM 56
            AFLKWYREAELIHGRWAM
Sbjct:   96 AFLKWYREAELIHGRWAM 113          
BLAST of CK739705 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 3.854e-79
Identity = 125/147 (85.03%), Postives = 139/147 (94.56%), Query Frame = 1
Query:   49 GQWP--AVVGIFVGQTWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 483
            G+W   AV+GIFVGQ WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:  104 GRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250          

HSP 2 Score: 45.8246 bits (107), Expect = 3.854e-79
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 3
Query:    3 AFLKWYREAELIHGRWAMA 59
            AFLKWYREAELIHGRWAMA
Sbjct:   91 AFLKWYREAELIHGRWAMA 109          
BLAST of CK739705 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.378e-13
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   49 GQWPAV--VGIFVGQTWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 483
            G+W  +  +G    +  +GI W +AG           G   PFS  +L+  ++L++G++E +R  +  +PE +                       YPGG +FDPL LA          D EKLD LK+AEIKH+RLAMVA LIF  +A   GK P
Sbjct:  145 GRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSEL-DPEKRI----------------------YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267          

HSP 2 Score: 29.6462 bits (65), Expect = 3.378e-13
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:   18 YREAELIHGRWAM 56
            +RE ELIHGRWAM
Sbjct:  137 FRECELIHGRWAM 149          
The following BLAST results are available for this feature:
BLAST of CK739705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CB4A_SOLLC9.343e-8187.07Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL3.853e-7985.71Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC3.854e-7985.03Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4C_ARATH3.378e-1334.62Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6092 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739705 ID=CK739705; Name=CK739705; organism=Citrus sinensis; type=EST; length=591bp
CAGCATTCCTGAAATGGTACAGAGAAGCAGAACTGATCCACGGACGATGG
GCAATGGCCTGCAGTTGTTGGGATATTCGTCGGACAGACGTGGAGTGGGA
TTCCATGGTTCGAGGCTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCC
TTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAG
CAAGCGGTGGGTTGATTTTTTCAATCCTGAATCCCAATCAGTTGAATGGG
CAACACCATGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACTGGTGAA
CAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAAC
AATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACAGGCTCA
AAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATGTTGATT
TTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTT
GTAAAACATGCTTATGTAGATAACTCACTGATTGATGTTAAAGGGTAATC
AATCGGATGTATATGAGTTCCCTCAATGAGAGTTCAATTTG
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