CK739707

Overview
NameCK739707
Unique NameCK739707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5715 contig Csv1_Contig5715:279..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739707 vs. ExPASy Swiss-Prot
Match: DNJB8_HUMAN (DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  115 SNFYAVLGLNKECTATELRNAYKKLALRWHPDRCSASGNAKFVDEAKKKFQTIQHAYSVLSDANKRLL 318
            +N+Y VLG+    +  +++ AY+KLALRWHPD+     N    +EA+KKF+ +  AY VLSD+ KR L
Sbjct:    2 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDK-----NPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 64          
The following BLAST results are available for this feature:
BLAST of CK739707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJB8_HUMAN8.198e-1145.59DnaJ homolog subfamily B member 8 OS=Homo sapiens ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6094 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739707 ID=CK739707; Name=CK739707; organism=Citrus sinensis; type=EST; length=476bp
GTGTTTAGTTTCATAATTTGTCGACAAGAAAAGGAAAAAGATTGTGTTTT
TGGATCGGTTTGGTCTGTTTTATGATAAGAAGAATCAAGAATGGCTAATG
GAGAAGAGAAAAGCAGTAACTTTTATGCAGTGTTGGGATTGAATAAGGAA
TGCACTGCAACAGAGCTCAGAAATGCTTATAAGAAACTTGCACTGAGATG
GCATCCAGATCGTTGTTCAGCTTCAGGAAATGCAAAGTTTGTGGACGAAG
CCAAGAAGAAATTTCAGACCATTCAACACGCCTATTCTGTTCTGTCTGAT
GCCAACAAGAGGCTCCTGTACGATGTAGGAGTCTATGATAGTGATGATGA
TGGCGATAATAATGGAATGGGAGATTTCTTGAATGAAATGGCTGCGATGA
TGAGCCAAACACAGACTAATGAAAATGGTGAGGAGACCTTTGAGGAATTG
CAGAATTTGTTTGAAGAGATGTTTCA
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