CK739712

Overview
NameCK739712
Unique NameCK739712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8046 contig Csv1_Contig8046:116..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: YQL5_SCHPO (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe GN=SPCC1827.05c PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.280e-29
Identity = 58/128 (45.31%), Postives = 86/128 (67.19%), Query Frame = 1
Query:  109 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEE 492
            +K++E K L  K  VLY+GR+PHGFYEK+M+ +FSQFG + RLR++RN+ TG SKH+ FIEF   +VA VVA+ MH YLL+  +LQ  +IP + VH  +++G +  +K +    + R    K  + E+
Sbjct:   92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPLSKEK 219          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_XENTR (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis GN=mki67ipl PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  151 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEE 492
            V+YIG IP   YE +++ +FSQFG + RLR++R+K TG SK + ++EF   EVA++VAD M+ YL  E +L+   +PPE VHP+L+ G   +++   +  V R   NK R+  E
Sbjct:   42 VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADTMNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAE 153          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_DANRE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio GN=mki67ip PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 54/129 (41.86%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  151 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGF-----NPRYKPVDRV----------QVERKLQNKERTLEE 492
            VLY+G +P G +E +++++F QFG + RLR++R+K TG SK +GF+EF   EVA++VA+ M+ YL+ E I++ H+IPPE VH KL+ G       P+Y  V R           +V  KL +KE  L +
Sbjct:   46 VLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVTRYNKTHTEDDVKKVGTKLLSKESKLRK 174          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_BOVIN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus GN=MKI67IP PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.971e-22
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  151 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFN-----PRYKPVDRVQVERKLQNKERTLE 489
            V+Y+G +P   YE +++A+FSQFG + R R++R+K TG SK +GF+EF   +VA++ A+ M+ YL  E +L+ H IPPE VH +L+R ++     P Y  V R    R L  K R  E
Sbjct:   46 VIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVHEELFREWHMPFKRPSYPAVKRYNQNRSLVQKLRMEE 163          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: NOP15_YEAST (Ribosome biogenesis protein 15 OS=Saccharomyces cerevisiae GN=NOP15 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.643e-22
Identity = 50/131 (38.17%), Postives = 85/131 (64.89%), Query Frame = 1
Query:  109 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRY-------KPVDRVQVERKLQNKER 480
            +K  ++K L   + ++Y+ R+PHGF+EKE+  +F+QFG +K +R+ARNK TG S+H+GF+EF + E A +  ++M+ YLL  H+LQV ++P      KL++ +  R        KPV +++   K +++ER
Sbjct:   78 KKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK-YKKRVLVEKGITKPVKQLKDNMKQKHEER 207          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_XENLA (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis GN=mki67ipl PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.925e-21
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  151 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEE 492
            V+YIG IP    E ++Q +F+QFG + RLR++R+K TG SK + ++E+   EVA++VAD M+ YL  E +L+   + PE VHP+L+ G N R++   +  V R   N +R  EE
Sbjct:   42 VIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEE 153          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_HUMAN (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo sapiens GN=MKI67IP PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.074e-19
Identity = 44/114 (38.60%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  151 VLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNKERTLEE 492
            V+Y+  +P+   E ++ ++FSQFG + R R++R+K TG SK + F+EF   +VA++VA+ M+ YL  E +L+ H +PPE VH +L++ +N  +K      V+R   N+ RTL +
Sbjct:   46 VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKR--YNRNRTLTQ 157          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_RAT (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Rattus norvegicus GN=Mki67ip PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.999e-15
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  109 RKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFNPRYKPVDRVQVERKLQNK 474
            R+  ++K     + V+Y+G +P    E  +  + +QFG I+R R++R+K TG S+ F F+EF   +VA++VA+ M  YL  E +L    +P E VH  L+   N  + P     V+R  Q +
Sbjct:   31 RRAKKKKEEKLNSGVVYLGHLPSTLSESHIYDYCAQFGDIRRFRLSRSKRTGNSRGFAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPREKVHKDLFNQCNVPFHPPSFPAVKRYNQKR 152          
BLAST of CK739712 vs. ExPASy Swiss-Prot
Match: MK67I_MOUSE (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Mus musculus GN=Mki67ip PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.478e-13
Identity = 44/149 (29.53%), Postives = 78/149 (52.35%), Query Frame = 1
Query:   91 LEGGPGRKLTEEKPLVNKATVLYIGRIPHGFYEKEMQAFFSQFGAIKRLRIARNKMTGQSKHFGFIEFNDPEVAEVVADAMHGYLLFEHILQVHLIPPEHVHPKLWRGFN-----PRYKPVDR----------VQVERKLQNKERTLEE 492
            ++G   +   ++K  +N+  V+Y+G +P    E  +  + +QFG I R R++R+K TG SK + F+EF   +VA++VA+ M  YL  E +L    +P + VH  L+   N     P +  V R          +++E + + KE+ L +
Sbjct:   29 IQGRTKKPQQKKKEKLNRG-VVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALFHRPSFPAVKRYNRKRGHLQMLKMEYRFKKKEKLLRK 176          
The following BLAST results are available for this feature:
BLAST of CK739712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
YQL5_SCHPO4.280e-2945.31Uncharacterized RNA-binding protein C1827.05c OS=S... [more]
MK67I_XENTR1.741e-2242.98MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_DANRE1.741e-2241.86MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_BOVIN2.971e-2242.37MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
NOP15_YEAST8.643e-2238.17Ribosome biogenesis protein 15 OS=Saccharomyces ce... [more]
MK67I_XENLA1.925e-2142.11MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_HUMAN3.074e-1938.60MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_RAT5.999e-1533.61MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
MK67I_MOUSE1.478e-1329.53MKI67 FHA domain-interacting nucleolar phosphoprot... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6101 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739712 ID=CK739712; Name=CK739712; organism=Citrus sinensis; type=EST; length=493bp
CAAAAGAAAGCATTGAAGAAGAATTTGAAGAAAGTTTCTTCACAGTTACC
AGTTCCCAGTGATAAAAAAGGCGCCGCCGATTTCTTGCCGCTGGAAGGTG
GGCCTGGGCGAAAACTTACTGAGGAGAAGCCACTAGTAAATAAAGCTACG
GTGTTATACATTGGCCGGATTCCACATGGGTTCTATGAGAAGGAAATGCA
AGCTTTCTTTAGCCAATTTGGTGCAATCAAGAGGCTAAGAATCGCGCGGA
ATAAAATGACTGGACAGTCAAAGCATTTTGGGTTCATCGAATTTAATGAT
CCTGAGGTAGCAGAAGTTGTAGCTGATGCCATGCATGGTTATTTGTTGTT
TGAGCACATTTTGCAAGTGCATCTTATTCCTCCAGAACATGTTCATCCAA
AACTATGGAGAGGCTTCAATCCTCGATACAAGCCAGTTGACCGGGTTCAA
GTGGAACGTAAGCTACAAAACAAGGAAAGAACTTTGGAAGAAC
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