CK739714

Overview
NameCK739714
Unique NameCK739714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11298 contig Csv1_Contig11298:295..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.251e-47
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 3
Query:    3 KDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            K++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS P G
Sbjct:   49 KEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG 149          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.639e-47
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = 3
Query:    3 KDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            K+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+TP+G
Sbjct:   48 KEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMG 148          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.015e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 3
Query:   24 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 302
            NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+
Sbjct:   56 NKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPL 148          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.658e-13
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 3
Query:   21 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVG 152          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+G
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVG 149          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 3
Query:    3 KDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            + Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S P+G
Sbjct:   50 RKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAISRPVG 150          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   21 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+G
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVG 152          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 36/93 (38.71%), Postives = 57/93 (61.29%), Query Frame = 3
Query:   24 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPI 302
            NK  A   LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S P+
Sbjct:   57 NKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAISRPL 149          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 3
Query:   21 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVG 156          
BLAST of CK739714 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 39/95 (41.05%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   21 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIG 305
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVG 154          
The following BLAST results are available for this feature:
BLAST of CK739714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VP321_ARATH1.251e-4793.07Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH3.639e-4792.08Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA2.015e-1341.94Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
CHM4B_DANRE7.658e-1342.11Charged multivesicular body protein 4b OS=Danio re... [more]
SNF7_SCHPO1.306e-1235.11Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
SNF7_CANAL1.306e-1237.62Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
CHM4C_DANRE1.306e-1241.05Charged multivesicular body protein 4c OS=Danio re... [more]
SNF7_CANGA2.228e-1238.71Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
CHM4B_CHICK2.910e-1242.11Charged multivesicular body protein 4b OS=Gallus g... [more]
CHM4B_MOUSE3.800e-1241.05Charged multivesicular body protein 4b OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6103 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739714 ID=CK739714; Name=CK739714; organism=Citrus sinensis; type=EST; length=563bp
CCAAGGACTACTCCAAAGCAAAGAACAAAAGAGCGGCCATACAATGTTTG
AAGAGGAAGAGGCTATACGAACAGCAAATAGAGCAGCTTGGGAATTTCCA
ATTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCTAAAGCCACAA
CTGAGACTGTAGATGCATTGAGGACGGGAGCATCGACAATGAAGGCTATG
CAGAAAGCAACGAACATAGATGATGTGGATAAGACCATGGATGAGATCAA
TGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGCATTATCAACTCCTA
TTGGTGCTGCTGCTGATTTCGATGAGGATGAATTGGAAGCAGAACTTGAA
GAACTGGAAGGTGCTGAGTTGGAAGAGCAACTTCTACAGCCAGCTACAAC
AGCTCCTGCTGCTCCGGTTCAGGTCCCTGCTGGCAGGCAACAAGCCCGTC
CTGTTCCCCAAAAGCAGCGAACAGCTGAGGAAGATGAGCTTGCTGCTTTA
CAAGCTGAGATGGCTCTTTAAGCAGGTTTTACCGCCATAATGAAGATATT
ATTTAAATAGCTG
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