CK739715

Overview
NameCK739715
Unique NameCK739715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBP14_ARATH (Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.357e-41
Identity = 72/105 (68.57%), Postives = 81/105 (77.14%), Query Frame = 1
Query:   61 KASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFERLN 375
            KASGGDIEKATDW+FNNP                QTPA +GLPDGGGKY+LFGIVSH+GTS  CGHYVAHILK+GRW IFND K G S DPPK+MGY+YFF+RL+
Sbjct:  694 KASGGDIEKATDWVFNNPNASVSDMDVSSSNSA-QTPAQSGLPDGGGKYKLFGIVSHMGTSVHCGHYVAHILKEGRWVIFNDDKVGISTDPPKDMGYVYFFQRLD 797          

HSP 2 Score: 31.9574 bits (71), Expect = 9.357e-41
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3
Query:    6 VETLLSFGFSEEVARNAFEGIG 71
            V+TLLSFGF+E+VAR A +  G
Sbjct:  676 VDTLLSFGFAEDVARKALKASG 697          
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBP5_PONAB (Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   61 KASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFERLNS 378
            +A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND K  AS  PPK++GY+YF++R+ S
Sbjct:  746 RATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS 858          
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBP5_HUMAN (Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 5.826e-21
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   61 KASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFERLNS 378
            +A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND K  AS  PPK++GY+YF++R+ S
Sbjct:  746 RATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVAS 858          
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBP5_MOUSE (Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   61 KASGGDIEKATDWIFNN-------PXXXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFERLNS 378
            +A+   +E+A DWIF++                          P    + DG GKY+LF  +SH+GTST CGHYV HI K+GRW I+ND K  AS  PPK++GY+YF++R+ S
Sbjct:  746 RATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAAESISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRVVS 858          
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBP13_HUMAN (Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.099e-19
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   61 KASGGDIEKATDWIFNNPXXXXXXXXXXXXXXXXQT-------PADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFERLNS 378
            +A+  ++E+A DWIF++P                         P    + DG G Y LF  +SH+GTST  GHY+ HI K+GRW I+ND K  AS  PPK++GY+YF+ R+ S
Sbjct:  751 RATNNNLERALDWIFSHPEFEEDSDFVIEMENNANANIISEAKPEGPRVKDGSGTYELFAFISHMGTSTMSGHYICHIKKEGRWVIYNDHKVCASERPPKDLGYMYFYRRIPS 863          
BLAST of CK739715 vs. ExPASy Swiss-Prot
Match: UBPA_DICDI (Ubiquitin carboxyl-terminal hydrolase A OS=Dictyostelium discoideum GN=ubpA PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.533e-16
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   31 SQKKLLGMHSKASGGDIEKATDWIFNN--------PXXXXXXXXXXXXXXXXQTPADAGLPDGGGKYRLFGIVSHIGTSTQCGHYVAHILKDGRWAIFNDTKGGASVDPPKEMGYLYFFER 369
            SQ KL   ++K   G++E+A DW+F++                          T +   + DG GKY L G +SH+G +  CGHYV HI K+ RW  FND     S  PPKE+GY+YF++R
Sbjct:  717 SQAKLALKNTK---GNLERAADWLFSHIDNLDELVAKDNASTSSINPSLIPQSTTSLQPVSDGVGKYELLGFISHLGNNVTCGHYVCHIKKNNRWIKFNDRHVQLSEQPPKELGYIYFYKR 834          
The following BLAST results are available for this feature:
BLAST of CK739715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UBP14_ARATH9.357e-4168.57Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabid... [more]
UBP5_PONAB5.826e-2141.59Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo a... [more]
UBP5_HUMAN5.826e-2141.59Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sa... [more]
UBP5_MOUSE7.609e-2141.59Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus mus... [more]
UBP13_HUMAN1.099e-1939.82Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo s... [more]
UBPA_DICDI2.533e-1637.19Ubiquitin carboxyl-terminal hydrolase A OS=Dictyos... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6104 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739715 ID=CK739715; Name=CK739715; organism=Citrus sinensis; type=EST; length=641bp
CAAAAGTTGAGACTTTGCTCTCATTTGGTTTCTCAGAAGAAGTTGCTAGG
AATGCATTCGAAGGCATCGGGTGGTGACATTGAAAAAGCAACAGATTGGA
TATTTAACAATCCTGATGCTTCTACTTCCTCGGATATGGATGCTGCTACT
TCAAGCACAGCACAAACTCCAGCTGACGCTGGTCTTCCAGATGGAGGAGG
GAAATACCGGCTTTTTGGAATAGTGAGCCATATTGGAACCTCTACACAAT
GTGGCCACTATGTTGCTCATATCTTAAAGGATGGTAGATGGGCTATTTTC
AACGATACCAAGGGTGGAGCTTCTGTTGATCCACCTAAAGAGATGGGGTA
TTTGTATTTCTTTGAAAGGCTTAACAGCTAATTTTGCAAGGCAGAATGAT
GAAAGACGGGAAATATTTAACAGCAAAAAGAGATGGGGGTAATATGGTTC
TTGGAATTCAGCAGCCAGCAATCTTGTGCTCTAAGCCTTGACATGGAGTT
GCTTGCCCGTGCTTCAAGCATGAATTTTTTTCGATGTGCTGCACAATTGG
TGGTGACTGTTTGTGCAGCCAGGTGTGCTCGAGTAGTGGACCTATACCTG
ACCCCCTTTCTTTCTTGCGCATACTAAGTATTATATTATTT
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