CK739720

Overview
NameCK739720
Unique NameCK739720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DGP10_ARATH (Protease Do-like 10, mitochondrial OS=Arabidopsis thaliana GN=DEGP10 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 2.843e-92
Identity = 159/186 (85.48%), Postives = 177/186 (95.16%), Query Frame = 2
Query:    5 SEVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            SE+TGVLV+KINPLSDAH+ILKKDD++LAFDGVPIANDGTV FRNRERITFDHLVSMKKP+E +LV+VLR+GKEHEFSITLRPLQPLVPVHQFD+LPSYYIFAG VF+PLTQPYLHEYGEDWYNTSPR LC RAL++LPKKAG+QLVI+SQVLMDDIN GYER A+LQV KVNGVE+ NL+HLCQL
Sbjct:  337 SEMTGVLVSKINPLSDAHKILKKDDVLLAFDGVPIANDGTVPFRNRERITFDHLVSMKKPDETALVKVLREGKEHEFSITLRPLQPLVPVHQFDQLPSYYIFAGFVFVPLTQPYLHEYGEDWYNTSPRTLCHRALKDLPKKAGQQLVIVSQVLMDDINTGYERLAELQVNKVNGVEVNNLRHLCQL 522          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DEGP3_ARATH (Putative protease Do-like 3, mitochondrial OS=Arabidopsis thaliana GN=DEGP3 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.090e-59
Identity = 113/185 (61.08%), Postives = 143/185 (77.30%), Query Frame = 2
Query:    8 EVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            ++TG+L+NKINPLSD H++LKKDDIILA DGVPI ND +V FR +ERITF HLVSMKKP E +L++VLR+GKE+EF+ +L+ + PLVP  Q+DK  SYYIF GLVF+PLT+PY+              + E AL ++PKKAGEQ+VI+SQ+L DDIN GY  F D QVKKVNGV++ NLKHL +L
Sbjct:  320 KMTGILINKINPLSDVHKVLKKDDIILAIDGVPIGNDSSVHFRKKERITFKHLVSMKKPCETALLKVLREGKEYEFNSSLKSVPPLVPKRQYDKSASYYIFGGLVFLPLTKPYI----------DSSCVSESALGKMPKKAGEQVVIISQILEDDINTGYSIFEDFQVKKVNGVQVHNLKHLYKL 494          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DEGP4_ARATH (Protease Do-like 4, mitochondrial OS=Arabidopsis thaliana GN=DEGP4 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.925e-56
Identity = 111/185 (60.00%), Postives = 139/185 (75.14%), Query Frame = 2
Query:    8 EVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            E+TG+L+N+INPLSDA++ L+KDDIILA D V I ND  V FRN+ERI F+H VSMKK +E  L++VLRDGKEHEF I ++P+ PLVP HQ+DKLPSYYIFAG VF+PLTQPY+              +C  A++ +P+KAGEQL     VL DDINAGY  F +L+V KVNGV++ENLKHL +L
Sbjct:  298 EMTGILINEINPLSDAYKRLRKDDIILAIDDVLIGNDAKVTFRNKERINFNHFVSMKKLDETVLLQVLRDGKEHEFHIMVKPVPPLVPGHQYDKLPSYYIFAGFVFVPLTQPYI----------DSTLICNCAIKYMPEKAGEQL-----VLADDINAGYTDFKNLKVIKVNGVQVENLKHLTEL 467          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DGP12_ARATH (Putative protease Do-like 12, mitochondrial OS=Arabidopsis thaliana GN=DEGP12 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.170e-45
Identity = 96/185 (51.89%), Postives = 127/185 (68.65%), Query Frame = 2
Query:    8 EVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            E TG+L+NKIN  S AH+IL+KDDIILA DGVP+ ++         RI+F+H +SMKKP+E  LV+VLR GKEHE++I+L+P++P + V Q+  LPSYYIF G VF+PLT+ Y+    +D Y                K   EQ VI+SQV+ DDIN GY  F DLQV+KVNGV+++NLKHL +L
Sbjct:  295 ETTGILINKINSSSGAHKILRKDDIILAIDGVPVLSE-------MRRISFNHFISMKKPDENILVKVLRKGKEHEYNISLKPVKPHIQVQQYYNLPSYYIFGGFVFVPLTKSYI----DDKYY---------------KITDEQHVIISQVMPDDINKGYSNFKDLQVEKVNGVKVKNLKHLREL 453          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DGP11_ARATH (Putative protease Do-like 11, mitochondrial OS=Arabidopsis thaliana GN=DEGP11 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.207e-44
Identity = 97/190 (51.05%), Postives = 127/190 (66.84%), Query Frame = 2
Query:    8 EVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERF--ADL---QVKKVNGVEIENLKHLCQL 562
            E+TG+L+NKIN  S A++IL+KDDIILA DGVPI ND  V F+N+ RI F +LVSMKKP EK+LV+VLR+GKE+E++I+L+P++P   V QF  +PSYYIF G VF+PLT+ YL                          +    V +S+ L DDIN GY+    A L   QV+KVNGVE++NLKHLC+L
Sbjct:  324 EMTGILINKINSSSGAYKILRKDDIILAIDGVPIGNDEKVPFQNKRRIDFSYLVSMKKPGEKALVKVLRNGKEYEYNISLKPVKPNFTVQQFYNVPSYYIFGGFVFVPLTKTYL-------------------------DSEHHQVKISERLADDINEGYQSLYGAQLWWEQVEKVNGVEVKNLKHLCEL 488          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DGP13_ARATH (Putative protease Do-like 13 OS=Arabidopsis thaliana GN=DEGP13 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.284e-41
Identity = 93/186 (50.00%), Postives = 118/186 (63.44%), Query Frame = 2
Query:    5 SEVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            SE+TG+L+  IN  SDA  ILKK D+IL+ DGV I NDGTV   NRER   D LVS+K+  E  L+++LR+GK HEF+ITLRP+Q LVP  Q D  PSYYIFAG VF+PL +   H  G +                     GEQ+V++S+VL D IN  Y  +  L+V  VN V++ENLKHLC+L
Sbjct:  263 SEMTGILIYNINQHSDALNILKKYDVILSIDGVAIENDGTVIIPNRERTRLDDLVSLKQLGETILLKILREGKMHEFNITLRPVQRLVPAGQIDNNPSYYIFAGFVFVPLRKQ--HFKGSN---------------------GEQIVVISEVLADVINVEYYMYKHLKVNSVNKVKVENLKHLCEL 425          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DEGP9_ARATH (Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP9 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.532e-37
Identity = 84/184 (45.65%), Postives = 118/184 (64.13%), Query Frame = 2
Query:    5 SEVTGVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLH-EYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHL 553
            S   GV + +I P +   ++LK  DIIL+FDGV IANDGTV FR+ ERI F +L+S K   + +LV+VLR+ +  EF+I L   + L+P H   K PSY+I AG VF  ++ PYL  EYG+++   +P +L E+ L  + +   EQLV++SQVL+ DIN GYE   + QV   NG  ++NLK L
Sbjct:  353 SHQKGVRIRRIEPTAPESQVLKPSDIILSFDGVNIANDGTVPFRHGERIGFSYLISQKYTGDSALVKVLRNKEILEFNIKLAIHKRLIPAHISGKPPSYFIVAGFVFTTVSVPYLRSEYGKEYEFDAPVKLLEKHLHAMAQSVDEQLVVVSQVLVSDINIGYEEIVNTQVVAFNGKPVKNLKGL 536          
BLAST of CK739720 vs. ExPASy Swiss-Prot
Match: DEGP2_ARATH (Protease Do-like 2, chloroplastic OS=Arabidopsis thaliana GN=DEGP2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 4.614e-34
Identity = 77/182 (42.31%), Postives = 113/182 (62.09%), Query Frame = 2
Query:   17 GVLVNKINPLSDAHEILKKDDIILAFDGVPIANDGTVAFRNRERITFDHLVSMKKPNEKSLVRVLRDGKEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFIPLTQPYLHEYGEDWYNTSPRRLCERALRELPKKAGEQLVILSQVLMDDINAGYERFADLQVKKVNGVEIENLKHLCQL 562
            GVLV ++ P SDA ++LK+ D+I++FD + +  +GTV FR+ ERI F +L+S K   + + + ++R G+  +  + LRP   LVP H     PSY I AGLVF PL++P + E  ED   T   +L  +A   + +  GEQ+VILSQVL +++N GYE   + QV K NG+ I N+ HL  L
Sbjct:  346 GVLVRRVEPTSDASKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGGQPSYIIVAGLVFTPLSEPLIEEECED---TIGLKLLTKARYSVARFRGEQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHHLAHL 524          
The following BLAST results are available for this feature:
BLAST of CK739720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DGP10_ARATH2.843e-9285.48Protease Do-like 10, mitochondrial OS=Arabidopsis ... [more]
DEGP3_ARATH1.090e-5961.08Putative protease Do-like 3, mitochondrial OS=Arab... [more]
DEGP4_ARATH1.925e-5660.00Protease Do-like 4, mitochondrial OS=Arabidopsis t... [more]
DGP12_ARATH1.170e-4551.89Putative protease Do-like 12, mitochondrial OS=Ara... [more]
DGP11_ARATH2.207e-4451.05Putative protease Do-like 11, mitochondrial OS=Ara... [more]
DGP13_ARATH2.284e-4150.00Putative protease Do-like 13 OS=Arabidopsis thalia... [more]
DEGP9_ARATH1.532e-3745.65Protease Do-like 9 OS=Arabidopsis thaliana GN=DEGP... [more]
DEGP2_ARATH4.614e-3442.31Protease Do-like 2, chloroplastic OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6109 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739720 ID=CK739720; Name=CK739720; organism=Citrus sinensis; type=EST; length=563bp
GCGGTCTGAAGTGACTGGGGTACTTGTGAACAAAATTAATCCTCTGTCAG
ATGCTCACGAAATATTGAAAAAGGATGATATTATTCTTGCATTTGATGGT
GTGCCTATAGCAAATGATGGAACAGTTGCTTTTCGTAACAGAGAACGTAT
AACATTTGATCACTTGGTGTCTATGAAGAAACCCAACGAGAAGTCTTTGG
TTAGAGTTTTGAGGGATGGCAAGGAGCATGAATTCAGTATTACACTACGA
CCTCTGCAACCGCTAGTTCCCGTACATCAATTCGATAAGCTTCCTAGCTA
TTACATATTTGCTGGCCTGGTGTTTATTCCACTTACACAGCCATATCTTC
ATGAATATGGAGAAGACTGGTATAATACTTCGCCACGTCGTTTGTGCGAA
CGTGCATTAAGGGAGCTGCCTAAAAAGGCTGGTGAACAACTCGTTATCCT
TTCGCAGGTGCTGATGGATGATATAAATGCCGGGTACGAGCGTTTTGCAG
ACCTACAGGTTAAGAAGGTCAATGGGGTGGAAATTGAAAATTTGAAGCAT
TTATGTCAGCTAG
back to top