CK739724

Overview
NameCK739724
Unique NameCK739724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739724 vs. ExPASy Swiss-Prot
Match: RPG1_ARATH (Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis thaliana GN=RPG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.506e-25
Identity = 65/174 (37.36%), Postives = 94/174 (54.02%), Query Frame = 3 
Query:    3 LLNCLLSAWYGLPFVSKNNILVSTINGTGSAIEIIYVLIFLLFA--PKKEKAKIFGXXXXXXXXXXXXXXXXXXXXHGN-ARKIFCGFAATIFSIIMYASPLSIMRMVIKTKSVEFMPFFLSLFVFLCGTSWFVFGLLGR-DPFVAVPNGFGCGLGTMQLILYFIYHKKGEPEK 512
            ++NC+L  +YGLP V K++ILVSTING G  IE+ YV ++L++    K  +  I G                     G+  ++ F G    +F+I MY +P   +  V+KTKSVE+MPF LSL  F+    W  + L+ + D +V   NG G  L   QLI+YF+Y+K    EK
Sbjct:   51 VMNCMLWVFYGLPVVHKDSILVSTINGVGLVIELFYVGVYLMYCGHKKNHRRNILGFLALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIAMYGAPSLAIIKVVKTKSVEYMPFLLSLVCFVNAGIWTTYSLIFKIDYYVLASNGIGTFLALSQLIVYFMYYKSTPKEK 224
The following BLAST results are available for this feature:
BLAST of CK739724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPG1_ARATH9.506e-2537.36Protein RUPTURED POLLEN GRAIN 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6113 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739724 ID=CK739724; Name=CK739724; organism=Citrus sinensis; type=EST; length=674bp
CCTTGCTCAATTGTCTCCTCTCTGCCTGGTATGGTCTCCCTTTTGTGTCG
AAGAACAACATTTTGGTATCAACAATCAATGGAACTGGTTCAGCAATTGA
GATCATATATGTTTTGATCTTCCTACTCTTTGCGCCAAAGAAGGAGAAAG
CGAAAATCTTTGGGCTTTTCATGCTTGTTCTCACAGTCTTCGCTGCTGTT
GCCTTGGTGTCTCTCTTAGCCTTTCATGGCAACGCTAGAAAGATTTTCTG
TGGCTTTGCTGCTACCATTTTCTCTATTATCATGTATGCCTCACCTCTTT
CTATCATGAGAATGGTGATTAAAACAAAGAGTGTTGAGTTCATGCCATTT
TTCTTGTCACTATTTGTCTTCCTATGTGGCACCTCTTGGTTCGTGTTTGG
CCTTCTTGGCCGTGACCCTTTTGTGGCCGTTCCCAATGGATTTGGGTGCG
GGCTAGGCACAATGCAGTTGATTTTGTACTTCATCTATCACAAGAAGGGT
GAGCCTGAGAAACCATCGGCAGCAATGGGGTCTGTTGAAATTGGCCAAGA
GAACCTTAAAAGGAACCAAGATGGCTAACGGCAACGGGGCTCTAGTTGAA
CAGTTTGAAGTGCAGAATCTGGGCACCATTCCTAAGAGACTTTGCCTCAA
ATTTTACCACTTTGTCTATGCTCA
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