CK739725

Overview
NameCK739725
Unique NameCK739725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length225
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:502..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.183e-33
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAGQTAL+  NE VRK+G  +GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   11 FAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.430e-33
Identity = 64/74 (86.49%), Postives = 66/74 (89.19%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAGQTAL+  NE VRK+G   GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   11 FAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.262e-33
Identity = 62/74 (83.78%), Postives = 67/74 (90.54%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAGQTAL+QSNE V K+G   GGR++MRRTVKSAP SIWYGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGL
Sbjct:   11 FAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.519e-32
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAGQT L+  NE VRKVG  +GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   11 FAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 83          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.891e-31
Identity = 62/74 (83.78%), Postives = 68/74 (91.89%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            FAGQTAL+Q +E VRKVGV+DG R +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   11 FAGQTALKQRDELVRKVGVSDG-RFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGL 83          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.669e-31
Identity = 61/74 (82.43%), Postives = 63/74 (85.14%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            F GQ   +  NEF+RKVG    GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   11 FVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.132e-30
Identity = 60/74 (81.08%), Postives = 63/74 (85.14%), Query Frame = 2
Query:    2 FAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            F G+T LRQ NEF+RK G     R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGL
Sbjct:   11 FTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGL 84          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.808e-28
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   32 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 82          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.808e-28
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 2
Query:   32 NEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            +E VR+VG + GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL
Sbjct:   20 DELVRRVGDS-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 82          
BLAST of CK739725 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.083e-28
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 2
Query:    5 AGQTALR-QSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 223
            AGQT LR Q NE V+KVG A   RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TPSYLTGEFPGDYGWDTA +
Sbjct:   13 AGQTLLRPQQNELVKKVGTAQA-RITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAV 85          
The following BLAST results are available for this feature:
BLAST of CK739725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CB23_TOBAC3.183e-3386.49Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB26_PETSP5.430e-3386.49Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_GOSHI9.262e-3383.78Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB21_SILPR3.519e-3283.78Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_LEMGI3.891e-3183.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_SOLLC8.669e-3182.43Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB215_PEA1.132e-3081.08Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_ORYSJ1.808e-2890.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI1.808e-2890.63Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH3.083e-2881.08Chlorophyll a-b binding protein type I, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6114 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739725 ID=CK739725; Name=CK739725; organism=Citrus sinensis; type=EST; length=225bp
ATTTGCTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGG
TTGGAGTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCC
GCTCCCCAGAGCATCTGGTACGGCCCAGACCGCCCAAAGTACTTGGGACC
ATTCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACT
ATGGCTGGGATACCGCTGGTTTATC
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