CK739728

Overview
NameCK739728
Unique NameCK739728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:64..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 4.047e-87
Identity = 155/191 (81.15%), Postives = 165/191 (86.39%), Query Frame = 1
Query:   34 AATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXXLPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 594
            A TS AVLNGL SSF+ GG KSQALLA     RV           L    KKSWIPAV+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGY
Sbjct:    2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGY 192          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 2.623e-86
Identity = 152/192 (79.17%), Postives = 166/192 (86.46%), Query Frame = 1
Query:   28 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTXXXXXXXXXX-LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 594
            M   ++ AVLNGL SSF+ GGKK+QALL    T RVT           + PKKSWIPAVK GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGY
Sbjct:    1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGY 192          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.880e-84
Identity = 150/197 (76.14%), Postives = 168/197 (85.28%), Query Frame = 1
Query:   28 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 594
            MAAATS  A++NG  S F++GGKKS Q+LL   ++V      T            PKKSWIPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGY
Sbjct:    1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGY 197          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 52/122 (42.62%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  166 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 513
            P +  W P          PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P
Sbjct:   63 PDRPLWFPGSTP------PEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKP 175          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.582e-21
Identity = 57/173 (32.95%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   13 VEIISMAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 513
            V   S ++  +G+++    +SF+ GG++ +     T               P +  W P          P WLDGSLPGD+GFDPLGL  DP  L+W ++AEL+H RWAM    GIF+ +  + I       W+ AG            +L   +L+L+GW E +RW D   P
Sbjct:   13 VAFSSPSSRRNGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTP------PPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKP 175          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  172 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 519
            K  W+P       L +P++L GSL GD GFDPLGL +DP  LKW+ +AEL++GRWAM  V G+ + + ++ I       W++AG +       S  +L   + +L  +VE +RW D  NP S
Sbjct:   54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGS 166          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  172 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 519
            K  W+P       L +P +L GSLPGD GFDPLGL +DP  L+W+ +AEL++GRWAM  V G+ + + ++ I       W+ AG +       S  +L   + +L  +VE +RW D  NP S
Sbjct:   53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGS 165          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query:  220 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKR 492
            P +LDGS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A     W +A    A PG  A     P  +G+L   L  + L + +VE +R
Sbjct:   56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR 157          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  172 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG---ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 519
            K SW+P ++      +P +LDGSL GD GFDPL L +DP  L+W+ +A++++GRWAM  V G+ + +  +      A      PG    F+  S      +   +VE +RW D  NP S
Sbjct:   33 KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGS 145          
BLAST of CK739728 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.267e-13
Identity = 48/155 (30.97%), Postives = 69/155 (44.52%), Query Frame = 1
Query:  181 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKR 492
            W P  K      +PE+LDGSL GDYGFDP GLGK   +L++                                           +RE ELIHGRWAM A +G    +  +G+ W +AG        +  G   PFS  +L+  ++L++G++E +R
Sbjct:   55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR 203          
The following BLAST results are available for this feature:
BLAST of CK739728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CB4A_SOLLC4.047e-8781.15Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC2.623e-8679.17Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL1.880e-8476.14Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB12_PETHY1.326e-2142.62Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC6.582e-2132.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH1.162e-1739.34Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.517e-1739.34Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB11_SOLLC3.498e-1447.06Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB120_HORVU5.967e-1436.13Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4B_ARATH2.267e-1330.97Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6117 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739728 ID=CK739728; Name=CK739728; organism=Citrus sinensis; type=EST; length=595bp
TACAGAAGTCAAGTAGAGATCATATCTATGGCGGCTGCAACATCCGGGGC
TGTGTTAAACGGATTGGGTTCTTCATTCATAAATGGTGGCAAGAAGAGCC
AGGCTCTTTTGGCTGGCACGAATAGAGTGACAAGTTCTAAAAAGTCAGTT
GTTGTAGCTGCTCTTCCACCTAAAAAATCTTGGATTCCTGCTGTTAAAGG
TGGTGGCAACCTCATTAATCCCGAATGGCTCGATGGCTCTCTCCCAGGTG
ACTACGGATTCGACCCACTTGGGCTTGGAAAGGACCCAGCATTCCTGAAA
TGGTACAGAGAAGCAGAACTGATCCACGGACGATGGGCAATGGCTGCAGT
TGTTGGGATATTCGTCGGACAGGCGTGGAGTGGGATTCCATGGTTCGAGG
CTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTG
GGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGA
TTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAA
GAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACC
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