CK739733

Overview
NameCK739733
Unique NameCK739733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5646 contig Csv1_Contig5646:3..589. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.902e-52
Identity = 93/98 (94.90%), Postives = 97/98 (98.98%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS
Sbjct:   48 AKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 145          

HSP 2 Score: 40.0466 bits (92), Expect = 4.902e-52
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  167 RLFGKPKQETNALTTLDKLNE 229
            RLFGKPKQET+ L TLDKLNE
Sbjct:    5 RLFGKPKQETSTLQTLDKLNE 25          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.387e-52
Identity = 91/98 (92.86%), Postives = 96/98 (97.96%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNIDDVDKTMDEINEQTENMKQIQEAL+
Sbjct:   47 AKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALA 144          

HSP 2 Score: 43.5134 bits (101), Expect = 6.387e-52
Identity = 20/24 (83.33%), Postives = 20/24 (83.33%), Query Frame = 2
Query:  158 MFTRLFGKPKQETNALTTLDKLNE 229
            M  RLFGKPKQE NAL TLDKLNE
Sbjct:    1 MMNRLFGKPKQEANALQTLDKLNE 24          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            AK   ++ NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S
Sbjct:   48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAIS 145          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: SNF7_CANGA (Vacuolar-sorting protein SNF7 OS=Candida glabrata GN=SNF7 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            A+ +    NK  A   LK+K++YE Q+ +L +    +  Q+  +E A    ET+ A++ GA  MK++    +ID VD+TMDEI EQ E  ++I +A+S
Sbjct:   49 ARKFLTRGNKTMAKNALKKKKVYEGQLVKLESQMDSLEQQLFSIESANLNLETMRAMKQGAKAMKSIHSGLDIDRVDETMDEIREQVELGEEISDAIS 146          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: CHMP5_XENTR (Charged multivesicular body protein 5 OS=Xenopus tropicalis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.644e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  318 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQTNYAIQSLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALS 150          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: SNF7_CANAL (Vacuolar-sorting protein SNF7 OS=Candida albicans GN=SNF7 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            A+ Y  +K    A   LKRK+ YE  + ++ N    +  Q+I +EGA    ET+ A++ GA  MK +    ++D V+ TMDEI EQ E   +I EA+S
Sbjct:   49 ARKYVSSKQTTLAKSALKRKKGYESNLLKVENQIETLETQLISIEGANLNLETMKAMKQGAKAMKQIHGEYDVDKVEDTMDEIREQVELADEISEAIS 146          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: SNF7_ASHGO (Vacuolar-sorting protein SNF7 OS=Ashbya gossypii GN=SNF7 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  306 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            A+ +    NK  A   LKRK+++E Q+ ++      +  Q+  +E A    ET+ A++ GAS MK + +  +++ VD+TMDEI EQ E  ++I EA+S
Sbjct:   50 ARHFLSKGNKNMAKAALKRKKVFESQLLKIDKQVDSLEQQLYSIENANLNLETMKAMKQGASAMKHIHEGLDVERVDETMDEIREQVELGEEISEAIS 147          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: CHMP5_XENLA (Charged multivesicular body protein 5 OS=Xenopus laevis GN=chmp5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.804e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  318 SKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            SK   K+ A++ LK+KR+YEQQ + L      +      ++  K T  TVDA++ GA  MK   K   ID ++   D++ +  EN  +IQEALS
Sbjct:   57 SKNMVKQKALRVLKQKRMYEQQRDNLNQQSFNMEQANYTIQTLKDTKTTVDAMKVGAKEMKKAYKQVKIDQIEDLQDQLEDMMENANEIQEALS 150          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.782e-11
Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  327 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAIS 148          
BLAST of CK739733 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  327 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALS 599
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAIS 148          
The following BLAST results are available for this feature:
BLAST of CK739733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VP321_ARATH4.902e-5294.90Vacuolar protein sorting-associated protein 32 hom... [more]
VP322_ARATH6.387e-5292.86Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA6.673e-1340.82Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
SNF7_CANGA1.258e-1136.73Vacuolar-sorting protein SNF7 OS=Candida glabrata ... [more]
CHMP5_XENTR1.644e-1137.23Charged multivesicular body protein 5 OS=Xenopus t... [more]
SNF7_CANAL2.804e-1137.76Vacuolar-sorting protein SNF7 OS=Candida albicans ... [more]
SNF7_ASHGO2.804e-1135.71Vacuolar-sorting protein SNF7 OS=Ashbya gossypii G... [more]
CHMP5_XENLA2.804e-1137.23Charged multivesicular body protein 5 OS=Xenopus l... [more]
CHM4B_DANRE4.782e-1141.76Charged multivesicular body protein 4b OS=Danio re... [more]
CHM4C_DANRE8.157e-1140.66Charged multivesicular body protein 4c OS=Danio re... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6122 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739733 ID=CK739733; Name=CK739733; organism=Citrus sinensis; type=EST; length=601bp
CAGACCGAGCCACGCTCTCTCCCTCTCATATAATTCACAGATCTCTACCG
ATTGTATCTTTTAATAAAGTCAGAATCCCTTTTTTTTTTTTTTTCCCTCA
TTTTTATAATTACAGAGGTAAAATCGAGGGTTTTTGATTAATCGCGGAGA
ATCAAACATGTTTACTCGGCTTTTTGGAAAACCTAAACAGGAAACCAATG
CCTTAACCACGCTCGATAAGCTAAATGAAGTATGAAGACACTCTTGAAAT
GCTAGAGAAAAAGGAGAAAGTACTCCTGAAAAAGGCTTCTGTAGAGGTTG
AAAAGGCCAAGGACTACTCCAAAGCAAAGAACAAAAGAGCGGCCATACAA
TGTTTGAAGAGGAAGAGGCTATACGAACAGCAAATAGAGCAGCTTGGGAA
TTTCCAATTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCTAAAG
CCACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATCGACAATGAAG
GCTATGCAGAAAGCAACGAACATAGATGATGTGGATAAGACCATGGATGA
GATCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGCATTATCAA
C
back to top