CK739735

Overview
NameCK739735
Unique NameCK739735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1181 contig Csv1_Contig1181:396..1007. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739735 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.182e-36
Identity = 88/147 (59.86%), Postives = 115/147 (78.23%), Query Frame = 1
Query:  193 VADDKTVIPS---PPAEDK--PEESKALAVVD-KAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIGSWENSRKAAVEAELKRLRNNW-RRKG*VCREMKNKMALIHRE-QKKEGMIEAKRG 609
            VAD+K ++     PPAE+K  P++SKAL VV+ KAPE   PA EK  EGS++RDAVLARV TEKR+SLI+AWEESEKS+AENKA KK+S+IG+WENS+KA +EAELK++     ++K     +MKNK+AL+H+E ++K  MIEAKRG
Sbjct:   29 VADEKAIVAPALPPPAEEKEKPDDSKALVVVETKAPE---PADEKK-EGSIDRDAVLARVATEKRVSLIKAWEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRG 171          
BLAST of CK739735 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.203e-30
Identity = 72/142 (50.70%), Postives = 99/142 (69.72%), Query Frame = 1
Query:  190 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIGSWENSRKAAVEAELKRLRNNW-RRKG*VCREMKNKMALIHRE-QKKEGMIEAKRG 609
            DVA++K  I +PP E   ++SKAL VV+K    E PA  K    S++RD  LA +  EKR+S +RAWEESEKS+AENKA KK++ + +WENS+KAAVEA+LK++     ++K      MKNK+A IH+E +++  MIEAKRG
Sbjct:   48 DVAEEK--IQNPPPEQIFDDSKALTVVEKP--VEEPAPAKPASASLDRDVKLADLSKEKRLSFVRAWEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRG 185          
BLAST of CK739735 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 71/142 (50.00%), Postives = 102/142 (71.83%), Query Frame = 1
Query:  190 DVADDKTVIPSPPAEDKPEESKALAVVDKAPEAEPPAGEKSTEGSVNRDAVLARVETEKRISLIRAWEESEKSQAENKAHKKLSSIGSWENSRKAAVEAELKRLRNNW-RRKG*VCREMKNKMALIHR-EQKKEGMIEAKRG 609
            +VAD+K  I +PP    P ESKALAVV+K  E   P  +K++ GS +RD +LA +E EK+ S I+AWEESEKS+AEN+A KK+S + +WENS+KAAVEA+L+++     ++K     +MKNK+A IH+  ++K  M+EAK+G
Sbjct:   30 EVADEK--IHNPP----PVESKALAVVEKPIEEHTP--KKASSGSADRDVILADLEKEKKTSFIKAWEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKG 163          
The following BLAST results are available for this feature:
BLAST of CK739735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU1.182e-3659.86Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH8.203e-3050.70Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH9.069e-2950.00Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6124 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739735 ID=CK739735; Name=CK739735; organism=Citrus sinensis; type=EST; length=610bp
CATTCACCAACTTTCTCCTTGTTACTTGCTTTGTAAAGATCTTCAGCTTT
GCTTTAAGCTTAAGGTTTCGGAGCAGAGAGAGACATGGCAGAGGAGGAAC
CAAAGAAGCTTGAAACTGAAACCCCGACCGAGCCGGCGCCTCCTCCTTCT
ACAGAACCAGCCGCTCCGGCAGCAGCTGAGCCTCCTAAAGATGTTGCCGA
TGACAAGACCGTAATTCCATCTCCACCTGCTGAGGATAAGCCTGAGGAAT
CCAAAGCCCTTGCTGTTGTTGATAAGGCTCCTGAGGCTGAACCTCCTGCT
GGTGAAAAAAGTACAGAGGGCTCTGTAAACAGAGATGCGGTGCTTGCAAG
AGTTGAAACGGAGAAGAGGATTTCGCTGATTAGAGCATGGGAAGAAAGTG
AGAAGTCGCAAGCAGAGAACAAAGCTCATAAAAAGCTATCTTCCATTGGT
TCATGGGAGAACAGCCGGAAAGCAGCTGTGGAAGCTGAGCTAAAAAGATT
GAGGAACAATTGGAGAAGAAAAGGCTGAGTATGTAGAGAAATGAAAAACA
AGATGGCACTAATCCACAGGGAGCAGAAGAAAGAGGGCATGATTGAAGCT
AAGAGAGGGG
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