CK739736

Overview
NameCK739736
Unique NameCK739736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5829 contig Csv1_Contig5829:975..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.659e-52
Identity = 91/170 (53.53%), Postives = 133/170 (78.24%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            H + I  +AVALK+AS+P F+ Y KQV+ N+  +G  L  +GYSLVT GT+NHLVLWDLRP G+TG+K+EK CD  +ITVNKNAV+GD++A+APGGVR+G PA+TSRGL E+DF ++ +FL R V ++L+IQ + GK + DF + + +N+D++ ++ +V++F++ F MPG
Sbjct:  310 HENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPG 479          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.751e-50
Identity = 97/170 (57.06%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKADVEKFASSFDMPG 510
            H + I  +AVALK+A +  FK YA QVK NA A+GN L  KGY LVT GT+NHL+LWDLRP  LTGNK EK  D+ NITVNKNAV GD++A++PGG+RIG+ A+TSRGL E DFE+I +FL R V+++LEIQ   GK L DF   +  +K++  L+ +VE+F+S F +PG
Sbjct:  287 HENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 5.088e-44
Identity = 90/176 (51.14%), Postives = 121/176 (68.75%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  305 HNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.679e-44
Identity = 91/175 (52.00%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+ +VE FAS F +PG
Sbjct:  305 HNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.134e-43
Identity = 90/176 (51.14%), Postives = 119/176 (67.61%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQA TP F+AY +QV AN  AL   L G GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F+HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  305 HNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.934e-43
Identity = 91/175 (52.00%), Postives = 117/175 (66.86%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNK---DIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQA T  FK Y  QV AN  AL   LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LTL+IQ + G    LK+F + L  +K    ++AL+  VE FAS F +PG
Sbjct:  305 HNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.626e-43
Identity = 91/183 (49.73%), Postives = 126/183 (68.85%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPGFKMSEMKY 534
            HNH I  LAVALKQA+TP ++AY +QV +N+      L+ KGY LV+GGTENHLVL +L+  G+ G++VEK+ +L +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+   AV+L L+++ E  G  LKDF + L  +     +I  LK DVE+FA  F   GF+ + MKY
Sbjct:  334 HNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 5.626e-43
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 510
            HNH I  +AVALKQA TP FK Y +QV AN  AL   L   GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLEKDF+++  F+HR + LT++IQ + G    LK+F + L     + + + AL+ +VE FA+ F +PG
Sbjct:  305 HNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 480          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 9.596e-43
Identity = 88/176 (50.00%), Postives = 118/176 (67.05%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPG 510
            HNH I  +AVALKQA T  FK Y  QV AN  AL + LT  GY +VTGG++NHL+L DLR  G  G + EK+ + C+I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ        LK+F + L  ++ I++    L+ +VE FAS+F +PG
Sbjct:  299 HNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQSHMATKATLKEFKEKLAGDEKIQSAVATLREEVENFASNFSLPG 474          
BLAST of CK739736 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.637e-42
Identity = 87/185 (47.03%), Postives = 127/185 (68.65%), Query Frame = 1
Query:    1 HNHQIGALAVALKQASTPAFKAYAKQVKANAVALGNYLTGKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNNKDIEA----LKADVEKFASSFDMPGFKMSEMKYKD 540
            HNH I  LAVALKQA+T  +KAY +QV +N+      L  +GY LV+GGT+NHLVL +L+P G+ G++VEK+ +  +I  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++ E+  +AVT+ L+++ E  G  LKDF   + ++  I++    L+ +VE+FA  F   GF+   MKYK+
Sbjct:  333 HNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
The following BLAST results are available for this feature:
BLAST of CK739736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI8.659e-5253.53Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI4.751e-5057.06Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_BOVIN5.088e-4451.14Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_HUMAN8.679e-4452.00Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYC_SHEEP1.134e-4351.14Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_PONAB1.934e-4352.00Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_PEA5.626e-4349.73Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT5.626e-4350.00Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_MOUSE9.596e-4350.00Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_ARATH1.637e-4247.03Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6125 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59A12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739736 ID=CK739736; Name=CK739736; organism=Citrus sinensis; type=EST; length=573bp
CACAACCACCAGATTGGTGCTCTAGCTGTTGCCCTGAAACAGGCCTCGAC
CCCTGCATTCAAGGCCTATGCGAAACAAGTCAAGGCCAATGCAGTTGCAC
TTGGGAACTACCTGACGGGCAAGGGATACAGCCTTGTCACTGGTGGAACT
GAGAACCACCTTGTTCTCTGGGATCTACGCCCTCTTGGATTGACTGGCAA
TAAGGTTGAGAAGCTCTGTGACCTTTGCAACATTACTGTGAACAAGAATG
CTGTGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGT
ACTCCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAAT
TGGAGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGG
AGTATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAG
GACATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGA
CATGCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAA
AGTATCATCATTATTGGTACTGT
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