CK739739

Overview
NameCK739739
Unique NameCK739739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINA5_ARATH (E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana GN=SINAT5 PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 2
Query:  320 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKYY 526
            SV+ELLECPVCTNSMYPPIHQCHNGHTLCSTCK+RVHNRCPTCRQELGDIRCLALEK AESLELPCKYY
Sbjct:   39 SVYELLECPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYY 107          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana GN=SINAT3 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.612e-35
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 2
Query:  320 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEK AESLELPCK+
Sbjct:   56 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKH 123          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana GN=SINAT4 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.001e-35
Identity = 64/69 (92.75%), Postives = 66/69 (95.65%), Query Frame = 2
Query:  320 SVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKYY 526
            SV+ELLECPVCT SMYPPIHQCHNGHTLCSTCK RVHNRCPTCRQELGDIRCLALEK AESLELPCK+Y
Sbjct:   57 SVYELLECPVCTYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFY 125          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.560e-29
Identity = 55/67 (82.09%), Postives = 60/67 (89.55%), Query Frame = 2
Query:  323 VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            V+ELLECPVCTN MYPPIHQC NGHTLCS+CK RV N CPTCR ELG+IRCLALEK AESLE+PC+Y
Sbjct:   51 VYELLECPVCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 117          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.568e-29
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 2
Query:  323 VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            V+ELLECPVCTN MYPPIHQC NGHTLCS CK RV N CPTCR ELG+IRCLALEK AESLE+PC+Y
Sbjct:   54 VYELLECPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRY 120          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SIAH1_RAT (E3 ubiquitin-protein ligase SIAH1 OS=Rattus norvegicus GN=Siah1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  332 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EK A S+  PCKY
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKY 100          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SIAH1_HUMAN (E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens GN=SIAH1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  332 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EK A S+  PCKY
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKY 100          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SIAH1_DANRE (E3 ubiquitin-protein ligase Siah1 OS=Danio rerio GN=siah1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  332 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EK A S+  PCKY
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKY 100          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SIA1A_MOUSE (E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus GN=Siah1a PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  332 LLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            L ECPVC + + PPI QC +GH +CS C+ ++   CPTCR  LG IR LA+EK A S+  PCKY
Sbjct:   38 LFECPVCFDYVLPPILQCQSGHLVCSNCRPKL-TCCPTCRGPLGSIRNLAMEKVANSVLFPCKY 100          
BLAST of CK739739 vs. ExPASy Swiss-Prot
Match: SINL6_ARATH (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana GN=At5g37870 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 28/65 (43.08%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  329 ELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKGAESLELPCKY 523
            ++L+CP+C  ++  P+ QC NGH  CS+C  ++ N+CP C   +G IRC A+E+  ES+ +PC+Y
Sbjct:   41 DILDCPICYQALKIPVFQCGNGHLACSSCCPKLRNKCPACALPVGHIRCRAMERVLESVLVPCRY 105          
The following BLAST results are available for this feature:
BLAST of CK739739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SINA5_ARATH2.487e-3695.65E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis ... [more]
SINA3_ARATH1.612e-3595.59E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis ... [more]
SINA4_ARATH8.001e-3592.75E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis ... [more]
SINA1_ARATH6.560e-2982.09Putative E3 ubiquitin-protein ligase SINAT1 OS=Ara... [more]
SINA2_ARATH8.568e-2982.09E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis ... [more]
SIAH1_RAT4.564e-1454.69E3 ubiquitin-protein ligase SIAH1 OS=Rattus norveg... [more]
SIAH1_HUMAN4.564e-1454.69E3 ubiquitin-protein ligase SIAH1 OS=Homo sapiens ... [more]
SIAH1_DANRE4.564e-1454.69E3 ubiquitin-protein ligase Siah1 OS=Danio rerio G... [more]
SIA1A_MOUSE4.564e-1454.69E3 ubiquitin-protein ligase SIAH1A OS=Mus musculus... [more]
SINL6_ARATH5.961e-1443.08Putative E3 ubiquitin-protein ligase SINA-like 6 O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6128 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739739 ID=CK739739; Name=CK739739; organism=Citrus sinensis; type=EST; length=528bp
TAAGAAAAAAAAAAAAAAACTTTGGAGAAGAAGAGAGAAAAAGAAAGATA
CCCATTAAAAGTTTTTGATTAAAAATTGAAAAAAAATTGTTGTTGATTTT
GTTTTATTGTCAGATGGAATTGGATAGTATTGAGTGTGTGTCATCCATGG
ATGGGTTGATGGATGAGGATGAGATCACCATCATCACCATCCTCCTCTTC
TTCATCACCATCAATTTGCATCATCAAAGCCTCACAATAATGCCATCAAC
AACAATAATGCAGCAAACACTAATGGCATCAATGGTATTGGGGGTCCCAC
GGCGATCGCCCCTGCCACCAGTGTTCATGAGTTGCTTGAATGCCCTGTTT
GCACCAATTCTATGTACCCACCAATACATCAGTGCCACAATGGACACACA
CTTTGTTCCACTTGTAAAACAAGGGTACACAACCGGTGCCCCACTTGTAG
ACAGGAGCTCGGAGATATTAGGTGTTTAGCATTGGAGAAGGGGGCTGAAT
CACTTGAACTGCCATGCAAGTATTACCA
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