CK739740 | Citrus Genome Database

Overview


Name	CK739740
Unique Name	CK739740
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	539

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1582	contig	Csv1_Contig1582:264..806.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14337_SOLLC (14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.064e-56
Identity = 81/134 (60.45%), Postives = 91/134 (67.91%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG----MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE+KG    + + +       +     C D+   I  H     PSST+GESTVFYYKMKGDYYRYLAEFK  DDRKEA++ SLK          S+L PTHPIRLGLALNFSVFYYEILNS
Sbjct:   58 RASWRILSSIEQKEESKGHEQNVKRIKTYRQRVEDELTKICSDILSVIDEH---LVPSSTTGESTVFYYKMKGDYYRYLAEFKAGDDRKEASEQSLKAYEAATATASSDLAPTHPIRLGLALNFSVFYYEILNS 188

HSP 2 Score: 98.5969 bits (244), Expect = 9.064e-56
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAIAELDSL+EESYKDSTLIMQLLRDNLTLWTSDL E
Sbjct:  189 PERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLEE 238

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.559e-55
Identity = 79/141 (56.03%), Postives = 89/141 (63.12%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE KG             K E +           C D+   I  H     PS+ +GESTVFYYKMKGDYYRYLAEFK  +++KEAAD S+K          ++LPPTHPIRLGLALNFSVFYYEILNS
Sbjct:   60 RASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSN-------ICNDVMRVIDEH---LIPSAAAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATAAAEADLPPTHPIRLGLALNFSVFYYEILNS 190

HSP 2 Score: 100.523 bits (249), Expect = 7.559e-55
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAI+ELD+LNEESYKDSTLIMQLLRDNLTLWTSD+PE
Sbjct:  191 PERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPE 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433_TOBAC (14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.562e-55
Identity = 82/141 (58.16%), Postives = 91/141 (64.54%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE+KG             + E++    A         +  ++V       PSSTSGESTVFYYKMKGDYYRYLAEFK  DDRKEAAD SLK          ++L PTHPIRLGLALNFSVFYYEILNS
Sbjct:   58 RASWRILSSIEQKEESKGHDQNVKRIKTYQQRVEDELTKYAL----TLSVIDEHVV-------PSSTSGESTVFYYKMKGDYYRYLAEFKSGDDRKEAADQSLKAYEAATATASADLAPTHPIRLGLALNFSVFYYEILNS 187

HSP 2 Score: 97.0561 bits (240), Expect = 7.562e-55
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAIAELDSL+EESYKDSTLIMQLLRDN TLWTSDL E
Sbjct:  188 PERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNFTLWTSDLEE 237

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433B_VICFA (14-3-3-like protein B OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.285e-54
Identity = 79/141 (56.03%), Postives = 90/141 (63.83%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE+KG            +K E +           C D+   I  H     PS+ +GESTVFYYKMKGDYYRYLAEFK  +++KEA D S+K          +ELPPTHPIRLGLALNFSVFYYEILNS
Sbjct:   60 RASWRILSSIEQKEESKGNDVNAKRIKEYRHKVETELSN-------ICIDVMRVIDEH---LIPSAAAGESTVFYYKMKGDYYRYLAEFKTGNEKKEAGDQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNS 190

HSP 2 Score: 100.523 bits (249), Expect = 1.285e-54
Identity = 47/50 (94.00%), Postives = 50/50 (100.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAI+ELD+LNEESYKDSTLIMQLLRDNLTLWTSD+PE
Sbjct:  191 PERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPE 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14312_ARATH (14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.674e-54
Identity = 78/141 (55.32%), Postives = 90/141 (63.83%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEE+KG             K E++           C+D+   I  H     P +TSGE+TVFYYKMKGDYYRYLAEFK   +RKEAA+ SLK          +ELP THPIRLGLALNFSVFYYEI+NS
Sbjct:   63 RASWRIMSSIEQKEESKGNESNVKQIKGYRQKVEDELAN-------ICQDILTIIDQH---LIPHATSGEATVFYYKMKGDYYRYLAEFKTEQERKEAAEQSLKGYEAATQAASTELPSTHPIRLGLALNFSVFYYEIMNS 193

HSP 2 Score: 100.523 bits (249), Expect = 1.674e-54
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAIAELD+L+EESYKDSTLIMQLLRDNLTLWTSDLPE
Sbjct:  194 PERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPE 243

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433C_SOYBN (14-3-3-like protein C OS=Glycine max GN=GF14C PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.847e-54
Identity = 80/145 (55.17%), Postives = 91/145 (62.76%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKGMN-----------KCEED*GI*AEG*R*ACKDL**----YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEEAKG +           K E +           C D+      Y++       PSS+SGE +VF+YKMKGDYYRYLAEFK  D+RKEAADHS+K          +EL  THPIRLGLALNFSVFYYEILNS
Sbjct:   60 RASWRILSSIEQKEEAKGNDVSVKRIKEYRLKVESELSN-------ICSDIMTVIDEYLI-------PSSSSGEPSVFFYKMKGDYYRYLAEFKSGDERKEAADHSMKAYQLASTTAEAELASTHPIRLGLALNFSVFYYEILNS 190

HSP 2 Score: 98.5969 bits (244), Expect = 2.847e-54
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAI+ELD+L+EESYKDSTLIMQLLRDNLTLWTSD+PE
Sbjct:  191 PERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPE 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14339_SOLLC (14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.397e-53
Identity = 75/134 (55.97%), Postives = 89/134 (66.42%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG----MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE++G    + + +E            C D+   I  H     PS ++GESTVFY+KMKGDYYRYLAEFK  +D+KE A+ SLK          +EL PTHPIRLGLALNFSVFYYEI+NS
Sbjct:   60 RASWRILSSIEQKEESRGNEQNVKRIKEYLQKVESELTNICNDIMVVIDQH---LIPSCSAGESTVFYHKMKGDYYRYLAEFKAGNDKKEVAELSLKAYQAATTAAEAELAPTHPIRLGLALNFSVFYYEIMNS 190

HSP 2 Score: 101.293 bits (251), Expect = 1.397e-53
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAI+ELDSLNE+SYKDSTLIMQLLRDNLTLWTSDLPE
Sbjct:  191 PERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPE 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14311_ARATH (14-3-3-like protein GF14 omicron OS=Arabidopsis thaliana GN=GRF11 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.098e-53
Identity = 81/141 (57.45%), Postives = 88/141 (62.41%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRILSSIEQKEE+KG             K EE+           C D+   I  H     P +TSGESTVFYYKMKGDY+RYLAEFK   DR+EAAD SLK          +EL  THPIRLGLALNFSVFYYEILNS
Sbjct:   58 RASWRILSSIEQKEESKGNEQNAKRIKDYRTKVEEELSK-------ICYDILAVIDKH---LVPFATSGESTVFYYKMKGDYFRYLAEFKSGADREEAADLSLKAYEAATSSASTELSTTHPIRLGLALNFSVFYYEILNS 188

HSP 2 Score: 97.8265 bits (242), Expect = 3.098e-53
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAK+AFDEAIAELDSLNE+SYKDSTLIMQLLRDNLTLWTSDL E
Sbjct:  189 PERACHLAKRAFDEAIAELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLEE 238

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 14339_ARATH (14-3-3-like protein GF14 mu OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.151e-51
Identity = 75/141 (53.19%), Postives = 87/141 (61.70%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG-----------MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI SSIEQKE  KG           M K E +           C D+   +  H     PS++ GESTVF+ KMKGDYYRYLAEFK  ++RKEAAD SLK          ++LPPTHPIRLGLALNFSVFYYEI+N+
Sbjct:   60 RASWRIFSSIEQKEAVKGNDVNVKRIKEYMEKVELELSN-------ICIDIMSVLDEH---LIPSASEGESTVFFNKMKGDYYRYLAEFKSGNERKEAADQSLKAYEIATTAAEAKLPPTHPIRLGLALNFSVFYYEIMNA 190

HSP 2 Score: 97.4413 bits (241), Expect = 2.151e-51
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAI+ELD+LNEESYKDSTLIMQLLRDNLTLWTSD+ E
Sbjct:  191 PERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDISE 240

[Close]

BLAST of CK739740 vs. ExPASy Swiss-Prot
Match: 1433_CHLRE (14-3-3-like protein OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.804e-51
Identity = 73/134 (54.48%), Postives = 88/134 (65.67%), Query Frame = 1

Query:    1 RASWRILSSIEQKEEAKG----MNKCEED*GI*AEG*R*ACKDL**YIVCH**TPNPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNS 390
            RASWRI+SSIEQKEEAKG    + +  +   +  E     C  +   +  H     P++++GES VFY KMKGDY+RYLAEFK   DRKEAA+H+L            +LPPTHPIRLGLALNFSVFYYEILNS
Sbjct:   60 RASWRIISSIEQKEEAKGNEEHVQRIRKYRTVVEEELSKICASILQLLDDH---LIPTASTGESKVFYLKMKGDYHRYLAEFKTGADRKEAAEHTLLAYKAAQDIALVDLPPTHPIRLGLALNFSVFYYEILNS 190

HSP 2 Score: 96.2857 bits (238), Expect = 2.804e-51
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 3

Query:  390 PERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPE 539
            PERACHLAKQAFDEAIAELDSL EESYKDSTLIMQLLRDNLTLWTSD+ +
Sbjct:  191 PERACHLAKQAFDEAIAELDSLGEESYKDSTLIMQLLRDNLTLWTSDMQD 240

The following BLAST results are available for this feature:

BLAST of CK739740 vs. ExPASy Swiss-Prot

BLAST of CK739740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143


Match Name	E-value	Identity	Description
14337_SOLLC	9.064e-56	60.45	14-3-3 protein 7 OS=Solanum lycopersicum GN=TFT7 P...	[more]
1433D_SOYBN	7.559e-55	56.03	14-3-3-like protein D OS=Glycine max GN=GF14D PE=2...	[more]
1433_TOBAC	7.562e-55	58.16	14-3-3-like protein OS=Nicotiana tabacum PE=2 SV=1	[more]
1433B_VICFA	1.285e-54	56.03	14-3-3-like protein B OS=Vicia faba PE=2 SV=1	[more]
14312_ARATH	1.674e-54	55.32	14-3-3-like protein GF14 iota OS=Arabidopsis thali...	[more]
1433C_SOYBN	2.847e-54	55.17	14-3-3-like protein C OS=Glycine max GN=GF14C PE=2...	[more]
14339_SOLLC	1.397e-53	55.97	14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 P...	[more]
14311_ARATH	3.098e-53	57.45	14-3-3-like protein GF14 omicron OS=Arabidopsis th...	[more]
14339_ARATH	2.151e-51	53.19	14-3-3-like protein GF14 mu OS=Arabidopsis thalian...	[more]
1433_CHLRE	2.804e-51	54.48	14-3-3-like protein OS=Chlamydomonas reinhardtii P...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6129 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739740 ID=CK739740; Name=CK739740; organism=Citrus sinensis; type=EST; length=539bp
AGAGCATCATGGAGGATTTTGTCTTCCATTGAACAGAAGGAGGAGGCCAA
GGGTATGAACAAATGTGAAGAGGATTAAGGAATATAGGCAGAGGGTTGAA
GATGAGCTTGCAAAGATCTGTAATGATATATTGTCTGTCATTGATGAACA
CCTAATCCATCCTCCACATCTGGAGAATCAACCGTGTTTTACTATAAGAT
GAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAAAGGTGCTGATGATC
GTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACGAGGCTGCTACAGCT
GCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATCAGACTTGGCCTGGC
TCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAACTCCCTGAGAGGGC
TTGCCACCTGGCTAAACAAGCATTTGATGAGGCGATTGCTGAACTTGATA
GCCTTAATGAAGAGTCCTACAAGGACAGCACCCTTATTATGCAGCTTCTT
CGGGATAATCTCACCTTGTGGACCTCGGATCTACCGGAG