CK739741

Overview
NameCK739741
Unique NameCK739741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length447
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1426 contig Csv1_Contig1426:1..447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739741 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.968e-18
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 2 
Query:  119 DAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESGYVKCQEIDLFGEIAGISFS 445
            D +S  V+  L  H D     +WHP+G ILA+G QDTT ++WDIR L +S   L   M A+  L F+  G  LA+ E ADFV +FDT+  +   Q ID FGEIAG ++S
Sbjct:  287 DIRSNSVSAKLP-HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTKL-FNTSQVIDFFGEIAGTAYS 393
[Close]
BLAST of CK739741 vs. ExPASy Swiss-Prot
Match: YN19_SCHPO (Uncharacterized WD repeat-containing protein C577.09 OS=Schizosaccharomyces pombe GN=SPBC577.09 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.779e-11
Identity = 39/104 (37.50%), Postives = 51/104 (49.04%), Query Frame = 2 
Query:  119 DAQSGKVTGNLKGHLDYSFASAWHPDGR-ILASGNQDTTCRLWDIRNLSQSLTVLK-------------GNMGAIRALKFTSDGRFLAMAEPADFVHVFDTESG 388
            D QSG  T +L GH     A  W P    +LASG+ D TCRLWDIR +S S   +               + G +  L +TSD R+LA     D + V++ ESG
Sbjct:  175 DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSFACMDLHNKYLPSNQTNISHYGTVNGLAWTSDARYLASCGTDDRIRVWNMESG 278
The following BLAST results are available for this feature:
BLAST of CK739741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGI3_SCHPO1.968e-1845.87Uncharacterized WD repeat-containing protein C2A9.... [more]
YN19_SCHPO6.779e-1137.50Uncharacterized WD repeat-containing protein C577.... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6130 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739741 ID=CK739741; Name=CK739741; organism=Citrus sinensis; type=EST; length=447bp
ATTTGACGCTGAAAATTTCAGTTGCCTTAATCGCTTCTCATATGATTGAA
TACCTCTGTTAGTCCAGATGGGAAGTTGCTTGCAGTACTTGGGGACAGCA
CAGAGTGCTTGATAGCCTGATGCTCAGTCTGGTAAAGTCACTGGGAACCT
TAAAGGACACTTGGACTACTCATTTGCTTCAGCCTGGCACCCGGATGGAA
GAATTTTAGCCTCTGGGAACCAAGACACTACTTGCAGGCTGTGGGACATA
AGGAACTTATCGCAGTCCCTGACTGTGTTGAAGGGAAATATGGGGGCCAT
TAGGGCTCTCAAGTTCACCTCCGACGGCCGGTTTCTGGCAATGGCTGAGC
CAGCAGACTTTGTTCATGTATTTGATACAGAGTCTGGATATGTCAAGTGC
CAGGAGATTGATCTATTTGGGGAGATTGCCGGAATATCCTTTAGCCC
back to top