CK739742

Overview
NameCK739742
Unique NameCK739742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12716 contig Csv1_Contig12716:254..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.582e-20
Identity = 45/108 (41.67%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 TYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 316
            TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   48 TYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.869e-19
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 2
Query:    5 YIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 334
            YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   57 YIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.566e-17
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:    8 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 313
            + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   50 LEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.489e-17
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 2
Query:    8 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 334
            + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   29 VQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.262e-16
Identity = 43/115 (37.39%), Postives = 68/115 (59.13%), Query Frame = 2
Query:    2 TYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 337
            T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:   51 TIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.039e-16
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 2
Query:    8 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 322
            + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   29 VEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.992e-13
Identity = 33/102 (32.35%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    5 YIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 310
            +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   33 FIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CK739742 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 7.529e-12
Identity = 32/102 (31.37%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    5 YIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 310
            +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:   33 FIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of CK739742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
OLEE1_BETVE2.582e-2041.67Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PSC13_MAIZE4.869e-1940.91Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
LAT52_SOLLC1.566e-1738.24Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR3.489e-1738.18Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
CHE1_CHEAL2.262e-1637.39Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
LOLB_LOLPR5.039e-1637.74Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
ALL1_OLEEU3.992e-1332.35Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU7.529e-1231.37Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6131 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739742 ID=CK739742; Name=CK739742; organism=Citrus sinensis; type=EST; length=481bp
CACCTACATCGCCGGTGCCAAGGTTAAGGTTGAATGCAAAGACAGGAAGT
CAATGCAAGTAGTATATAGCAGGGAAGGGAAAACAGACTCAACTGGAACA
TATAAGATCCTCGTTTCAGAAGACCATCAGGATCAACTTTGCGATGCTGT
CCTCATTAGTAGCCCCCAGAATGACTGCAAAACAGTTGCCCCAGGGCGTG
AGCGTTCCCGTGTGATCTTGACCAGTTACAACGGCATTTCTTCTGAAACC
CGATATGCCAATTCAATGGGCTTCATGAAGGCAGAGCCCATGTCTGGCTG
TGCTGAGGTTCTCAGGCTATATCAGGAGGAGGATGTGTAGAGAATGGTGT
GGCATGGTTTTTTCTATCGCTTTCCATTTGTTTAAGCTTTGTGTTGCCTT
ATACTGTCTCTTCTATTAGTAGTGCCCGGATGGCTGTGTTGTTTCTATGT
TTAGAGAATTCTTAATTTGTTGTTAAAGGAC
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