CK739745

Overview
NameCK739745
Unique NameCK739745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1624 contig Csv1_Contig1624:226..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.178e-26
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 256
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG S   A D+
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPSAEDD 132          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A3_ARATH (Probable histone H2A.3 OS=Arabidopsis thaliana GN=At4g27230 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.844e-25
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G+  SK  +ED
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGS--SKPTEED 131          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.409e-25
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 262
            GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S + AAD+DS
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSKAVAADDDS 134          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A2_ARATH (Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.409e-25
Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH+LLLPKK G S   +ADED
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHSLLLPKKAGAS-KPSADED 132          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.146e-25
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.146e-25
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIANGGVMPNIHNLLLPKK G+S   AA +D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAGSSAKAAAADD 133          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.008e-25
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 235
            GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK G S
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGAS 125          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSJ (Probable histone H2A.2 OS=Oryza sativa subsp. japonica GN=Os07g0545400 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.561e-24
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A2_ORYSI (Probable histone H2A.2 OS=Oryza sativa subsp. indica GN=OsI_025469 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.561e-24
Identity = 55/65 (84.62%), Postives = 58/65 (89.23%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEELS+LLG VTIA+GGVMPNIHNLLLPKK G S   AA +D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSAKAAAGDD 133          
BLAST of CK739745 vs. ExPASy Swiss-Prot
Match: H2A8_ORYSI (Probable histone H2A.8 OS=Oryza sativa subsp. indica GN=OsI_036919 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.022e-23
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 2
Query:   65 GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADED 259
            GNAARDNKKTRIVPRHIQLAVRNDEEL+KLLG  TIA+GGVMPNIH  LLPKK G+S +  AD+D
Sbjct:   69 GNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSKASHADDD 133          
The following BLAST results are available for this feature:
BLAST of CK739745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
H2A1_ARATH2.178e-2690.63Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A3_ARATH1.844e-2589.23Probable histone H2A.3 OS=Arabidopsis thaliana GN=... [more]
H2A7_WHEAT2.409e-2586.36Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S... [more]
H2A2_ARATH2.409e-2589.23Probable histone H2A.2 OS=Arabidopsis thaliana GN=... [more]
H2A3_ORYSJ3.146e-2586.15Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI3.146e-2586.15Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A6_ARATH7.008e-2596.49Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]
H2A2_ORYSJ1.561e-2484.62Probable histone H2A.2 OS=Oryza sativa subsp. japo... [more]
H2A2_ORYSI1.561e-2484.62Probable histone H2A.2 OS=Oryza sativa subsp. indi... [more]
H2A8_ORYSI5.022e-2380.00Probable histone H2A.8 OS=Oryza sativa subsp. indi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6134 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739745 ID=CK739745; Name=CK739745; organism=Citrus sinensis; type=EST; length=359bp
CGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAGG
TTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAATT
GTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCAA
GCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATCC
ACAACCTTCTCCTTCCCAAGAAGACTGGAACTTCAGGGTCCAAGGCTGCT
GATGAAGACAGTTAAATTCTCATCACTAGAAGAGTCAAAGTGATATGATC
AACACTCTTTGTGTTAATTGTGCTATGTGACATTTGCCTTTTTAGTGTTT
GTTTAGTTA
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