CK739757

Overview
NameCK739757
Unique NameCK739757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length250
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:47..293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.174e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.416e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.416e-32
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.298e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_SOLTU (ADP-ribosylation factor 1 OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 1.695e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGLT +KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.214e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+F KLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.099e-30
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+FTKL  RLF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 69
[Close]
BLAST of CK739757 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 2.448e-30
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:   43 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 249
            MGL+FTKLFSRLFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVG 69
The following BLAST results are available for this feature:
BLAST of CK739757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
ARF_MAIZE1.174e-32100.00ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF2_ORYSJ1.174e-32100.00ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ORYSJ1.174e-32100.00ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF_VIGUN3.416e-3298.55ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_DAUCA3.416e-3298.55ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF2_ARATH1.298e-3197.10ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_SOLTU1.695e-3197.10ADP-ribosylation factor 1 OS=Solanum tuberosum PE=... [more]
ARF1_ARATH2.214e-3197.10ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF1_SALBA1.099e-3094.20ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO2.448e-3094.20ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6147 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739757 ID=CK739757; Name=CK739757; organism=Citrus sinensis; type=EST; length=250bp
CTCTCTCGCGTTCTCTGAAGATAGTGATCCCCAGCTGGAAGAATGGGGCT
GACTTTCACAAAGCTGTTCAGCCGGCTCTTTGCCAAGAAAGAGATGCGAA
TTCTAATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAG
CTCAAGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGT
GGAGACCGTTGAATATAAAAACATCAGTTTCACTGTGTGGGATGTTGGTG
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