CK739760

Overview
NameCK739760
Unique NameCK739760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length480
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1978 contig Csv1_Contig1978:586..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.570e-36
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M ++DSQ+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ +  KD IKIHGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ I  K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ I  K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 74/115 (64.35%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M D+D QIPT++DPFA+        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ I  K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 9.765e-36
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M D++ Q+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ +  KD IKIHGF
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.275e-35
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIKDSLAPGD-KGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            MVD D QIPTS+DPFA+ + + A G  K YVH+R+QQRNG+K LTTVQGLK++  Y KILKDLKK  CCNG VVNDK LGK IQLQGD RKNV  F+V++ I  KD+IK+H F
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.275e-35
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M ++DSQ+PT++DPFAD   +    G K YVH+RVQQRNG+K LTTVQGLK+++ Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ +  KD I+IHGF
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 2.175e-35
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M D+D QIPT++DPF++        A G K YVH+R+QQRNG+K LTTVQGLK++F Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ I  K+ IKIHGF
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.267e-35
Identity = 72/113 (63.72%), Postives = 86/113 (76.11%), Query Frame = 1
Query:   97 MVDIDSQIPTSYDPFADIK-DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            M + D+ IPT++DPFA+   +    G K YVH+RVQQRNG+K LTTVQGLK+D+ Y KILKDLKKEFCCNG VV D  LG+ IQLQGD RKNV  FLV++ I  K+ IKIHGF
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113          
BLAST of CK739760 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.013e-24
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  127 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKGIQLQGDHRKNVMIFLVKSKIGDKDRIKIHGF 432
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+ IQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
The following BLAST results are available for this feature:
BLAST of CK739760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI11_ARATH2.570e-3664.60Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_ORYSJ9.765e-3664.35Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI9.765e-3664.35Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE9.765e-3664.35Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI12_ARATH9.765e-3663.72Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_PIMBR1.275e-3565.49Protein translation factor SUI1 homolog OS=Pimpine... [more]
SUI1_BRAOL1.275e-3563.72Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_SPOST2.175e-3563.48Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_SALBA8.267e-3563.72Protein translation factor SUI1 homolog OS=Salix b... [more]
EIF1_PONAB1.013e-2449.52Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6150 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739760 ID=CK739760; Name=CK739760; organism=Citrus sinensis; type=EST; length=480bp
AGTCTCTTTACTTCTCACACTTTCATTTCAGTACTTTTGCACAGGAAACT
TCTAAGCTGACCTTCGAAGGTTTTAGGTCTTCTATAAGCAAAGTACATGG
TTGACATAGACAGCCAGATTCCAACTTCCTATGATCCCTTTGCTGATATA
AAGGACTCCCTTGCCCCAGGTGACAAAGGGTACGTGCATCTCCGCGTACA
GCAGAGGAATGGAAAGAAGTGCTTAACAACTGTTCAAGGACTTAAAGAGG
ATTTTGGCTACCAGAAGATCCTCAAGGACCTCAAAAAGGAGTTCTGTTGT
AACGGGAATGTTGTCAATGACAAAGTTCTCGGGAAGGGGATTCAGCTTCA
AGGGGATCATCGGAAGAATGTTATGATCTTTCTCGTTAAGAGTAAGATTG
GGGACAAGGATCGTATCAAGATTCATGGGTTCTAAGCAAATGTGGTGATT
AATATATATGGGTATGGGATAATATATGTG
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