CK739766

Overview
NameCK739766
Unique NameCK739766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length388
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:801..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 4.614e-69
Identity = 122/129 (94.57%), Postives = 126/129 (97.67%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEIAGVV+SFDPKPIQGDWNGAGAH NYSTKSMRNDGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV
Sbjct:  214 LWVARYILERITEIAGVVVSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 7.871e-69
Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWV+RYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGGFEVIKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYV
Sbjct:  214 LWVSRYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGFEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 3.906e-68
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W ARYILERITEIAGVVLS DPKPIQGDWNGAGAH NYSTKSMRN+GG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTG+HETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV
Sbjct:  214 VWAARYILERITEIAGVVLSLDPKPIQGDWNGAGAHTNYSTKSMRNNGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 2.532e-67
Identity = 119/129 (92.25%), Postives = 125/129 (96.90%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +WVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MR DGG+EVIKKAI+KLGLRH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV
Sbjct:  214 VWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMREDGGYEVIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 7.367e-67
Identity = 120/129 (93.02%), Postives = 124/129 (96.12%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEIAGVVLS DPKPI GDWNGAGAH NYSTKSMRNDGG+EVIKKAIEKLG RH+EHIAAYGEGNERRLTG+HETADI+TF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV
Sbjct:  214 LWVARYILERITEIAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIEKLGKRHNEHIAAYGEGNERRLTGRHETADISTFFWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 9.622e-67
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEIAGVVLSFDPKPI+GDWNGAGAH NYSTK+MRNDGG+EVIK AIEKLG RH EHIAAYGEGNERRLTG+HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYV
Sbjct:  214 LWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 250.366 bits (638), Expect = 2.143e-66
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTGKHETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYV
Sbjct:  214 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAITKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 2.799e-66
Identity = 115/129 (89.15%), Postives = 122/129 (94.57%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLGLRH EHIAAYGEGNERRLTGKHET DINTF WGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYV
Sbjct:  214 IWAARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 3.656e-66
Identity = 119/129 (92.25%), Postives = 122/129 (94.57%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAH NYSTKSMRNDGG+EVIKKAI KL  RH EHIAAYGEGNERRLTG+HETAD+NTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYV
Sbjct:  214 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAIAKLEKRHKEHIAAYGEGNERRLTGRHETADMNTFVWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYV 342
[Close]
BLAST of CK739766 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 3.656e-66
Identity = 116/129 (89.92%), Postives = 123/129 (95.35%), Query Frame = 2 
Query:    2 LWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 388
            +W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAIEKLGLRH EHI+AYGEGNERRLTG HETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV
Sbjct:  214 IWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYV 342
The following BLAST results are available for this feature:
BLAST of CK739766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GLNA2_VITVI4.614e-6994.57Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA1_VITVI7.871e-6995.35Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_ALNGL3.906e-6893.02Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA1_LOTJA2.532e-6792.25Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_LUPLU7.367e-6793.02Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA_VIGAC9.622e-6792.25Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA3_PHAVU2.143e-6693.02Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA3_MEDSA2.799e-6689.15Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA2_SOYBN3.656e-6692.25Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]
GLN12_ARATH3.656e-6689.92Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6156 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739766 ID=CK739766; Name=CK739766; organism=Citrus sinensis; type=EST; length=388bp
GTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGATTGCTGGAG
TTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGGAATGGAGCT
GGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGATGGAGGCTT
TGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGCACAGTGAGC
ACATTGCCGCATATGGTGAAGGCAATGAACGCCGACTCACTGGCAAACAT
GAAACAGCTGACATCAACACTTTCAAATGGGGTGTTGCTAACCGTGGGGC
ATCAATCCGTGTTGGACGAGACACAGAGAAAGAAGGAAAGGGTTACTTTG
AGGACAGGAGACCTGCTTCTAACATGGATCCATATGTT
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