CK739771

Overview
NameCK739771
Unique NameCK739771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5089 contig Csv1_Contig5089:155..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.565e-43
Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 1
Query:   76 AVQPVT-IKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQP + +KGLGGSSL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVY DLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:    9 AVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.662e-42
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 1
Query:   76 AVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQP   +KGLGGSSLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVY DLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:    9 AVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 1
Query:   76 AVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQP T+KGL GSS+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVY DLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:    9 AVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 109          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 1
Query:   76 AVQP-VTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AV+P   IKGLGGSSLAG KL++KP+R + +PKS +A  VVAKYGDKSVY DLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:    9 AVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 1
Query:   76 AVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVY DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LG
Sbjct:    6 AVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.044e-36
Identity = 76/102 (74.51%), Postives = 85/102 (83.33%), Query Frame = 1
Query:   76 AVQPVTIKGLGGSSLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQPV +KGL GSS++G KL V+P+ + L R       AVVAKYG+KSVY DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LG
Sbjct:    6 AVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.363e-36
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 1
Query:   76 AVQPVTIKGLGGSSLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            +V+PV IKGL GSS++G KL V +P+ +++R    +A AVVAKYGDKSVY DL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LG
Sbjct:    8 SVKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLG 107          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 71/103 (68.93%), Postives = 84/103 (81.55%), Query Frame = 1
Query:   76 AVQPVTIKGLGGSSLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 378
            AVQP  +KGL GSS++G KL V+P+   +   + +A   AVVAKYG+KSVY DL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKRGLLLKFL++G
Sbjct:    6 AVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIG 108          
BLAST of CK739771 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  199 KYGDKSVYLDLEDLGNTTGQWDLYGSDAPSPYNSLQ 306
            KYGDKSVY DLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of CK739771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA2.565e-4384.31Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH1.662e-4283.33Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH_SPIOL4.837e-4279.21Photosystem I reaction center subunit VI, chloropl... [more]
PSAH1_ARATH1.077e-4181.37Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_ORYSJ1.044e-3674.51Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI1.044e-3674.51Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE1.363e-3674.51Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU7.479e-3568.93Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA4.717e-1388.89Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6161 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739771 ID=CK739771; Name=CK739771; organism=Citrus sinensis; type=EST; length=661bp
CTTAATCAGCTTCAAGTAAGCAAGTCAAGAATTTACAACAAACCAAGGCC
ATGGCATCTCTTGCAACCATAGCGTGCTGTGCAACCAGTCACCATCAAAG
GCCTTGGAGGCAGCTCTCTTGCTGGAACTAAGCTCACCGTCAAGCCAACT
CGCCAGAATTTGAGACCCAAAAGCTTCAAGGCTGGTGCTGTAGTGGCTAA
GTATGGTGATAAGAGTGTGTACCTTGATTTGGAGGATTTGGGCAACACTA
CGGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTCACCGTACAACTCT
CTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATTCACCAAGAGAGG
ATTATTGCTCAAGTTCTTGATATTGGGGAGGAGGTTCAACCCTTGCTTAC
TTCAGTGCTACAGCTAGTGGTGACATTCTCCCAATCAAGAAGGGCCCTCA
ACTTCCACCAAAGCTCGGACCACGTGGCAAGATCTAAATTAGTTTTCAAT
CCTCCTATTTTTAACTTTTCATTGTATGTATCTTCTTGGTATTGGAAACC
TGTAGGTTTGTCCAACATCCTACTTAAGACTTCCTTTGTTATTAATGCCA
ATATATTTGCTTCAATTGAAAATTCATGCGCATGACTACTTGAGTATCAA
AAAAAAAAAAA
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