CK739772

Overview
NameCK739772
Unique NameCK739772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig126 contig Csv1_Contig126:200..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739772 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 5.076e-53
Identity = 95/120 (79.17%), Postives = 108/120 (90.00%), Query Frame = 2
Query:    2 FKLLFLHVQVPDEDGFDDMDSIYASPEDFRRMQHRDKVRGLHLLEYFVNRCHEIGVACEAWIKKGDPKEVICREVQRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHAECPVITIKRRA 361
            FK+L LHVQV DEDGFDD+DSIYASPEDFR M+  +K +GLHLLE+FVN+CHEIGV CEAWIK GDPK+VIC+EV+RV+PD LVVGSRGLG FQ+VFVGTVS FCVKHAECPV+TIKR A
Sbjct:   46 FKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNA 165          
The following BLAST results are available for this feature:
BLAST of CK739772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USPAL_ARATH5.076e-5379.17Universal stress protein A-like protein OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6162 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739772 ID=CK739772; Name=CK739772; organism=Citrus sinensis; type=EST; length=476bp
CTTCAAGCTTCTCTTTCTCCACGTCCAGGTTCCCGATGAAGATGGTTTTG
ATGATATGGATAGCATATATGCATCTCCTGAAGATTTCAGACGCATGCAG
CACAGGGACAAAGTGAGAGGACTTCATCTTCTGGAGTATTTTGTCAACAG
ATGTCATGAGATTGGGGTAGCTTGTGAAGCATGGATTAAGAAAGGAGATC
CCAAAGAAGTAATCTGCCGCGAAGTGCAACGTGTCCAGCCAGATCTCCTG
GTTGTGGGAAGTCGGGGACTTGGTCCTTTTCAGAGGGTCTTTGTTGGGAC
TGTGAGTGAATTTTGTGTGAAGCATGCTGAGTGCCCTGTGATAACCATTA
AACGTAGGGCAGATGAAACTCCTGAGGACCCTGTTGATGACTGAACTGAT
CACTATCTCAATATTTTTCATCCTGTTGATAAACTTTGGACAGAAAACGT
TAGTTGGGGGAGATATTAAATGTACT
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