CK739778

Overview
NameCK739778
Unique NameCK739778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8095 contig Csv1_Contig8095:156..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739778 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.137e-51
Identity = 108/170 (63.53%), Postives = 125/170 (73.53%), Query Frame = 1
Query:   52 NSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESRGTDGRRXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSHVFWKW 549
            NSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  G++GRR                       GVIDEYLERSK NKELND+KRLATSGANFARA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGS+VFWKW
Sbjct:    5 NSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVDGSNGRRSAMVFLAATLFSTAAVSASANA-GVIDEYLERSKTNKELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171          
BLAST of CK739778 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.130e-39
Identity = 71/84 (84.52%), Postives = 82/84 (97.62%), Query Frame = 1
Query:  298 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSHVFWKW 549
            + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAKQKKVPFISDDLE+EC+GK+K+KCGS+VFWKW
Sbjct:   29 IFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112          
BLAST of CK739778 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.092e-39
Identity = 71/84 (84.52%), Postives = 80/84 (95.24%), Query Frame = 1
Query:  298 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSHVFWKW 549
            V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGS+VFWKW
Sbjct:   62 VFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145          
BLAST of CK739778 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-20
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 1
Query:  295 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGS 531
            GV+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I++DL++EC+GKD   CGS
Sbjct:   54 GVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132          
The following BLAST results are available for this feature:
BLAST of CK739778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAN_ARATH4.137e-5163.53Photosystem I reaction center subunit N, chloropla... [more]
PSAN_MAIZE2.130e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_HORVU8.092e-3984.52Photosystem I reaction center subunit N, chloropla... [more]
PSAN_VOLCA1.298e-2058.23Photosystem I reaction center subunit N, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6168 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739778 ID=CK739778; Name=CK739778; organism=Citrus sinensis; type=EST; length=639bp
GTAAAACAAAAAAAAAAAATTTGCGCTGCAGCAGGAGCGATGGCAGCCAT
GAACTCTAGTGTACTCGCATGCAACTATGCCATTTCAGGCAGTGCTGGAT
CATCTGAGCTCAATGCAAAGATTGTTTCGGTTTCAACCCCGGCTGTGCAT
GGCCACAAAATGCCTGTGATCAGAGCTCAACAAGTTGATGTTTCAAAAGA
ATCAAGAGGAACTGATGGAAGGAGAGCTGCCATGGCTCTTCTAGCAGTTA
CCCTTTTCACCACAGCTACTGCTGCTGCTTCTTCTGCTAATGCTGGGGTC
ATCGATGAATACCTTGAGAGAAGCAAAGCCAACAAGGAATTGAATGACCA
GAAGAGATTGGCAACAAGTGGTGCAAACTTTGCCAGAGCATACACTGTTC
AATTTGGCACATGCAAGTTCCCTGAGAACTTCACAGGCTGCCAAGATCTT
GCCAAGCAAAAGAAAGTGCCATTCATCTCGGATGATTTGGAATTGGAGTG
CAAAGGGAAAGATAAATACAAGTGTGGGTCCCATGTTTTCTGGAAATGGT
GAAGTGGGACAACTGATCTCTTTAAACATTTTATTTTACCCTCCCATGTA
TCTAAGTTTCCATTGAAGAAGCTTTACTTGTGCTTAAAA
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