CK739787

Overview
NameCK739787
Unique NameCK739787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length179
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:504..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.291e-28
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGA+EGYR+AGGPLGEVTDPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.291e-28
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:   83 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 141          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.291e-28
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:  132 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 190          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.992e-28
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:  145 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLA 203          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.992e-28
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA
Sbjct:  151 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA 209          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.908e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  142 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.908e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  139 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 197          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.104e-28
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.104e-28
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  142 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 200          
BLAST of CK739787 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.666e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 3
Query:    3 GLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLA 179
            GLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA
Sbjct:  144 GLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLA 202          
The following BLAST results are available for this feature:
BLAST of CK739787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB27_TOBAC2.291e-2894.92Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_CUCSA2.291e-2896.61Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA2.291e-2896.61Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA2.992e-2894.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY2.992e-2894.92Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE3.908e-2898.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE3.908e-2898.31Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC5.104e-2896.61Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2B_SOLLC5.104e-2896.61Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB2A_SPIOL6.666e-2894.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6177 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739787 ID=CK739787; Name=CK739787; organism=Citrus sinensis; type=EST; length=179bp
GCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATC
TTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTA
CAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAG
GTGGCAGCTTTGATCCATTGGGTTTGGCT
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