CK739794

Overview
NameCK739794
Unique NameCK739794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig444 contig Csv1_Contig444:134..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.811e-50
Identity = 99/152 (65.13%), Postives = 119/152 (78.29%), Query Frame = 2
Query:    2 AGATPARVV--GSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            AGA+ +  V  G++ K +A+ V +L++KA+LKDVG                  +EVLLGGDDGSLAF+P +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLN  GETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:   19 AGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 6.283e-50
Identity = 99/147 (67.35%), Postives = 114/147 (77.55%), Query Frame = 2
Query:   11 TPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            T A+++ +T     +AVP+LS+KA+LK+VG                  +EVLLGG DGSLAF+P  FSV+SGE+IVFKNNAGFPHNVVFDEDEIPSGVD +KISMS EDLLN PGETY VTLTEKGTY FYCSPHQGAGMVG+VTVN
Sbjct:   27 TTAKIIPTT-----TAVPRLSVKASLKNVGAAVVATAAAGLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.118e-49
Identity = 98/150 (65.33%), Postives = 111/150 (74.00%), Query Frame = 2
Query:    2 AGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            AG+     V ++ K SAS +P+LSIKA++KDVG                  I+VLLG DDGSLAFVPS FS+S GEKIVFKNNAGFPHN+VFDED IPSGVD SKISMS EDLLN  GET+ V L+ KG YSFYCSPHQGAGMVG+VTVN
Sbjct:   19 AGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.711e-47
Identity = 97/150 (64.67%), Postives = 113/150 (75.33%), Query Frame = 2
Query:    2 AGATPARVVGSTMKASASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            A A+ A+V  S  K SAS +P+LSIKA+LK+VG                  ++VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+FDED +PSGVDVSKISMS EDLLN  GET+ V L++KG Y+FYCSPHQGAGMVG+V VN
Sbjct:   20 ASASNAKVSASA-KVSASPLPRLSIKASLKEVGAAVVATAASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.109e-46
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2
Query:   32 STMKASAS--------AVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            ST+K+SA+        A PKL++K++LK+ G                  IEVLLGG DGSLAF+P+ FS++ GEKIVFKNNAG+PHNVVFDEDEIPSGVDV+KISM  +DLLNG GETY V LTE GTYSFYC+PHQGAGMVG+VTVN
Sbjct:   20 STIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASIALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDVAKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.504e-46
Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = 2
Query:   50 ASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            A A P++SIKA+LKDVG                   EVLLG  DG LAFVPS  S++SGEKI FKNNAGFPHNVVFDEDE+P+GVDV+KISM  EDLLN PGE Y+VTLTEKGTY FYC+PH GAGMVG+VTVN
Sbjct:   32 AVATPRMSIKASLKDVGVVVAATAAAGILAGNAMAAEVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCAPHAGAGMVGKVTVN 165          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.568e-45
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  155 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVD SKISMS EDLLNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum GN=PETE PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.086e-45
Identity = 90/135 (66.67%), Postives = 98/135 (72.59%), Query Frame = 2
Query:   47 SASAVPKLSIKATLKDVGXXXXXXXXXXXXXXXXXXIEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            S S  P+L ++A+LKD G                  +EVLLG  DG LAFVPSS  VS+GE IVFKNNAGFPHNVVFDEDEIP+GVD SKISM  EDLLN PGETY+V L  KGTY FYCSPHQGAGMVGQVTVN
Sbjct:   34 STSQSPRLCVRASLKDFGVALVATAASAVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVDASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 83/98 (84.69%), Postives = 93/98 (94.90%), Query Frame = 2
Query:  155 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTV 448
            IE+ LGGDDG+LAFVP SF+V++GEKIVFKNNAGFPHN+VFDEDE+P+GVD SKISMS EDLLN PGETYAVTL+EKGTYSFYCSPHQGAGMVG+VTV
Sbjct:    1 IEIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCSPHQGAGMVGKVTV 98          
BLAST of CK739794 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.356e-44
Identity = 84/99 (84.85%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  155 IEVLLGGDDGSLAFVPSSFSVSSGEKIVFKNNAGFPHNVVFDEDEIPSGVDVSKISMSTEDLLNGPGETYAVTLTEKGTYSFYCSPHQGAGMVGQVTVN 451
            IEVLLG DDG LAFVP +FSVS+GEKI FKNNAGFPHNVVFDEDEIP+GVDVSKISMS E+ LNGPGETY+VTL+EKGTY+FYC+PHQGAGMVG+VTVN
Sbjct:    1 IEVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 99          
The following BLAST results are available for this feature:
BLAST of CK739794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PLAS_SOLLC4.811e-5065.13Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS_SPIOL6.283e-5067.35Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS1_POPNI3.118e-4965.33Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_POPNI1.711e-4764.67Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_ARATH1.109e-4663.51Plastocyanin major isoform, chloroplastic OS=Arabi... [more]
PLAS_SILPR5.504e-4667.16Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_TOBAC3.568e-4585.86Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_PEA6.086e-4566.67Plastocyanin, chloroplastic OS=Pisum sativum GN=PE... [more]
PLAS_RUMOB1.038e-4484.69Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS1_TOBAC1.356e-4484.85Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6184 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739794 ID=CK739794; Name=CK739794; organism=Citrus sinensis; type=EST; length=579bp
AGCCGGTGCAACACCAGCCAGAGTTGTTGGTTCCACCATGAAGGCCTCAG
CCTCTGCTGTCCCAAAGCTCAGCATCAAGGCCACACTCAAAGATGTTGGA
GTGGCCGTTGCGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAATGCCAT
GGCCATTGAGGTTTTGCTTGGTGGTGATGATGGGTCCTTGGCTTTTGTTC
CAAGCTCTTTCTCTGTCAGCTCCGGTGAAAAGATTGTGTTCAAGAACAAT
GCTGGGTTCCCACACAACGTTGTTTTCGATGAAGATGAGATTCCGAGTGG
TGTTGATGTTTCAAAAATCTCCATGTCTACAGAAGACCTTCTCAATGGTC
CTGGAGAGACTTATGCTGTTACTCTGACTGAAAAAGGCACTTACTCTTTC
TACTGTTCCCCTCACCAAGGAGCTGGCATGGTTGGACAAGTGACTGTTAA
TTAAGTTCACATTCAGACTTTGTTTGCCTCATCTCATTGGTTATCGGTCT
CTTCTTTTTGCATTTTATGAGTATCATACATATTTTCATTTGGTGAGAGA
GAATGTTATGTGGTGAGACACTTTAACCA
back to top