CK739798

Overview
NameCK739798
Unique NameCK739798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739798_ssr219 microsatellite CK739798_ssr219:219..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4134 contig Csv1_Contig4134:69..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_CITUN (V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.420e-57
Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY+RKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE LNVSRDHNSYKKLLKGLI
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_CITLI (V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.217e-56
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY+RKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE LNVSRDHNSYKKLLK LI
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_GOSHI (V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 3.100e-50
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY++KEKQVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LI
Sbjct:    1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_SPIOL (V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.103e-47
Identity = 97/118 (82.20%), Postives = 108/118 (91.53%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EY+RKEKQV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE L VS DH+ YK+LLK L+
Sbjct:    1 MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEKQVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELV 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE_MESCR (V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 5.473e-47
Identity = 98/118 (83.05%), Postives = 106/118 (89.83%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY+RK KQV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE L VS DH+ Y+ LLK LI
Sbjct:    1 MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAKQVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_ARATH (V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 5.473e-47
Identity = 95/118 (80.51%), Postives = 109/118 (92.37%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+Y++KEKQ ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K+ LNVSRD  +YK+LLK LI
Sbjct:    1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEKQADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE3_ARATH (V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.336e-44
Identity = 94/124 (75.81%), Postives = 107/124 (86.29%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSR------DHNSYKKLLKGLI 433
            MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEY++KEKQV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K+ L VS+       H+ YK LLK LI
Sbjct:    1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEKQVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLI 124          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE2_ARATH (V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 9.661e-44
Identity = 89/118 (75.42%), Postives = 106/118 (89.83%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y RK KQV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K+ L VS D N+YKKLLK LI
Sbjct:    1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLKQVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLI 118          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_RAT (V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 58/118 (49.15%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +    V +D   Y+ LL GL+
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120          
BLAST of CK739798 vs. ExPASy Swiss-Prot
Match: VATE1_MOUSE (V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.830e-26
Identity = 58/118 (49.15%), Postives = 86/118 (72.88%), Query Frame = 2
Query:   80 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYQRKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEGLNVSRDHNSYKKLLKGLI 433
            ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + Y++KEKQ+E +KKI+ S  +N +R+KVL+A+DDL+++++  A +    V +D   Y+ LL GL+
Sbjct:    3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEKQIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLV 120          
The following BLAST results are available for this feature:
BLAST of CK739798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATE_CITUN3.420e-5798.31V-type proton ATPase subunit E OS=Citrus unshiu GN... [more]
VATE_CITLI2.217e-5697.46V-type proton ATPase subunit E OS=Citrus limon GN=... [more]
VATE_GOSHI3.100e-5087.29V-type proton ATPase subunit E OS=Gossypium hirsut... [more]
VATE_SPIOL1.103e-4782.20V-type proton ATPase subunit E OS=Spinacia olerace... [more]
VATE_MESCR5.473e-4783.05V-type proton ATPase subunit E OS=Mesembryanthemum... [more]
VATE1_ARATH5.473e-4780.51V-type proton ATPase subunit E1 OS=Arabidopsis tha... [more]
VATE3_ARATH4.336e-4475.81V-type proton ATPase subunit E3 OS=Arabidopsis tha... [more]
VATE2_ARATH9.661e-4475.42V-type proton ATPase subunit E2 OS=Arabidopsis tha... [more]
VATE1_RAT1.830e-2649.15V-type proton ATPase subunit E 1 OS=Rattus norvegi... [more]
VATE1_MOUSE1.830e-2649.15V-type proton ATPase subunit E 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6188 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739798 ID=CK739798; Name=CK739798; organism=Citrus sinensis; type=EST; length=434bp
CCTTAGCGATCGAAGAAAGTCGAATCGCTCTTCTCATTTTGATATCAACA
ATCTAATCAAATCAAAAGATCCCGCGAAAATGAACGACGCTGATGTTTCG
AAGCAGATCCAGCAGATGGTGCGGTTTATCCGCCAAGAAGCCGAAGAGAA
AGCCAACGAGATCTCAGTTTCTGCCGAAGAAGAATTCAACATAGAGAAGT
TGCAGCTGGTGGAAGCAGAGAAGAAGAAGATCAGACAAGAGTACCAGCGG
AAAGAGAAGCAAGTCGAAATCAGAAAGAAGATTGAGTACTCCATGCAGCT
GAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAGGATGATTTGGTCAGTA
ATATGATGGAGGCAGCATCAAAGGAGGGTTTGAATGTGAGTCGAGATCAC
AATTCATATAAGAAGCTTTTGAAGGGGCTTATTG
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