CK739802

Overview
NameCK739802
Unique NameCK739802
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length505
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:333..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.141e-48
Identity = 93/103 (90.29%), Postives = 98/103 (95.15%), Query Frame = 3
Query:   12 IKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 320
            ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:   58 VRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.488e-45
Identity = 89/101 (88.12%), Postives = 96/101 (95.05%), Query Frame = 3
Query:   15 KAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 317
            +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   68 RAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42
Identity = 83/102 (81.37%), Postives = 91/102 (89.22%), Query Frame = 3
Query:   15 KAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 320
            +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:   43 RAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 3
Query:   27 NTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 305
            NT  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.468e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:   21 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 137
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CK739802 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.008e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   15 KAELNTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 293
            KA L+  +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of CK739802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH1.141e-4890.29Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL4.488e-4588.12Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU7.922e-4281.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.835e-2253.76Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA3.468e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE5.008e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739802 ID=CK739802; Name=CK739802; organism=Citrus sinensis; type=EST; length=505bp
GCTTCGGCGGCATTAAAGCTGAGCTGAACACACCACTTGTCATCAGCCTC
AGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCA
AAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCC
ACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAA
TCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTCGCTTGGGGTTC
CATTGGCCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCT
ATGATCCCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTT
GTCTCTTTTAGTTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAGTTAAT
AAATTTCCTAGCATTTAATGGATGAGACCGATGATGTAATCTTTGCATTT
TTCACATTTTTAACGTGCATGTTTTTTTCTCTTAAAAAAAAAAAAAAAAA
AAAAA
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