CK739814

Overview
NameCK739814
Unique NameCK739814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.002e-24
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    4 IAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            IA+ FG ++WD G K SK QDL N  G+MY+  +FLG  NA SV PV+ +ERTV+YRERAAGM++A+PYA  QV+                  AMIGF+W++GK
Sbjct: 1192 IALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGK 1295          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.298e-23
Identity = 54/105 (51.43%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VIA+ FG I+WD G KT K QDL N  G+MYS  +F+G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGFKW   K
Sbjct: 1221 VIALLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAK 1325          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: AB34G_ARATH (ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.775e-23
Identity = 48/105 (45.71%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VI + FGL++W  G K  K+QDL N FGAMY+  +FLG +NA +V P + +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG+ W + K
Sbjct: 1206 VIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVK 1310          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: AB39G_ARATH (ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.931e-23
Identity = 50/105 (47.62%), Postives = 66/105 (62.86%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VI + FGLI+W  G KT  +QDL N FGAMY+  +FLG  NA +V P I +ERTV+YRE+AAGM++A+PYA++QVA                  +MIG  W + K
Sbjct: 1207 VIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAK 1311          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.435e-22
Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   K
Sbjct: 1214 VIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAK 1318          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.435e-22
Identity = 51/105 (48.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VIA+ FG I+WD G K +K QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A PYA  QV                   AMIGF+W   K
Sbjct: 1214 VIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAK 1318          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.447e-22
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    4 IAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKW 303
            IA+ FG ++WD G KT  +QDL N  G+MY+  +FLG  NA SV PV+ VERTV+YRE+AAGM++AMPYA AQV                   AMIGF+W
Sbjct: 1180 IALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEW 1279          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.196e-22
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VIA+ FG ++W+ G +T KQQDL N  G+MY+  +++G  N+ SV PV+ VERTV+YRERAAGM++A PYA  QVA                  +MIGF+W + K
Sbjct: 1206 VIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAK 1310          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.174e-22
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    4 IAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            IA+ FG ++WD G K S+ QDL N  G+MY+  +FLG  N+ SV PV+ VERTV+YRE+AAGM++A+PYA AQV                   +MIGF+W + K
Sbjct: 1193 IALIFGTMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSAIPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAK 1296          
BLAST of CK739814 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.451e-22
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:    1 VIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGK 315
            VIA+ FG I+WD G K  + QDL N  G+MY+  +F+G  N  SV PV+ VERTV+YRERAAGM++A+PYA  QVA                  +MIGF+W + K
Sbjct: 1225 VIALIFGTIFWDLGGKMGQSQDLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYTLVQSVIYSIIVYSMIGFQWTVAK 1329          
The following BLAST results are available for this feature:
BLAST of CK739814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR1_TOBAC2.002e-2450.00Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR2_ORYSJ1.298e-2351.43Probable pleiotropic drug resistance protein 2 OS=... [more]
AB34G_ARATH3.775e-2345.71ABC transporter G family member 34 OS=Arabidopsis ... [more]
AB39G_ARATH4.931e-2347.62ABC transporter G family member 39 OS=Arabidopsis ... [more]
PDR3_ORYSJ1.435e-2248.57Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI1.435e-2248.57Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
AB40G_ARATH2.447e-2251.00ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR4_ORYSJ3.196e-2246.67Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_NICPL4.174e-2247.12Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_ORYSJ5.451e-2247.62Probable pleiotropic drug resistance protein 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6204 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739814 ID=CK739814; Name=CK739814; organism=Citrus sinensis; type=EST; length=316bp
GTCATTGCTATTTTCTTTGGTTTAATCTACTGGGACAAAGGACAGAAGAC
TTCCAAACAACAAGATCTGCAGAATCTTTTTGGAGCTATGTATTCTATTT
GTATTTTCCTTGGAACCAGCAATGCCATATCCGTGATACCCGTTATCTGC
GTTGAGAGAACAGTATACTACCGTGAAAGAGCTGCAGGGATGTTTGCTGC
AATGCCTTATGCACTTGCTCAAGTAGCCGTAGAGATAATATATGTATCAG
TTCAAAGTGTTGTGTATGTTCTTATCCTTTACGCGATGATTGGATTCAAG
TGGGAGCTGGGAAAAT
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