CK739816

Overview
NameCK739816
Unique NameCK739816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:18..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.609e-58
Identity = 111/132 (84.09%), Postives = 119/132 (90.15%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE ELAD IPVVKTSI G RIIG     NKNGLL+PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTDLD+ETEE+IADV
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.251e-52
Identity = 97/132 (73.48%), Postives = 113/132 (85.61%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADV
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.117e-51
Identity = 95/132 (71.97%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADV
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.117e-51
Identity = 97/132 (73.48%), Postives = 115/132 (87.12%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIGRL VGN+NGLL+P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEEIIADV
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.459e-51
Identity = 96/132 (72.73%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIGR+  GN+ GLL+P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DV
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 7.240e-51
Identity = 94/132 (71.21%), Postives = 111/132 (84.09%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA  IPVV  SI G RIIGR+CVGN++GLL+P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADV
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 2.751e-50
Identity = 95/132 (71.97%), Postives = 112/132 (84.85%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIGRL  GN+ GLL+P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEEIIADV
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 5.188e-49
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MATRL +ENSC+VGVF KLTN +CLV   GS+ F  T E  LAD IPVV+TSI G RI+GRL  GNKNGLLLP+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEEIIADV
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADV 132          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.562e-45
Identity = 91/134 (67.91%), Postives = 112/134 (83.58%), Query Frame = 1
Query:  112 MATRLMFENS-CEVGVFSKLTNAFCLV-AIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MATRL ++N+ CE+GVFSKLTNA+CLV A   S +F++ +E++L  VIP+V TSIGG+  IG LCVGNKNGLLL HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEEII+DV
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDV 134          
BLAST of CK739816 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.753e-45
Identity = 82/132 (62.12%), Postives = 109/132 (82.58%), Query Frame = 1
Query:  112 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADV 507
            MA R+ +E S +VGVF  LTN++CLV +GG+++FYS  EAEL+D+IPVV TSI   RI+GRL VGN++GLL+P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +V
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEV 132          
The following BLAST results are available for this feature:
BLAST of CK739816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IF6_BETVU1.609e-5884.09Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_MOUSE2.251e-5273.48Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN1.117e-5171.97Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_DROME1.117e-5173.48Probable eukaryotic translation initiation factor ... [more]
IF6_YEAST1.459e-5172.73Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_BOVIN7.240e-5171.21Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_SCHPO2.751e-5071.97Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DICDI5.188e-4973.48Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH1.562e-4567.91Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL7.753e-4562.12Eukaryotic translation initiation factor 6 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6206 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739816 ID=CK739816; Name=CK739816; organism=Citrus sinensis; type=EST; length=508bp
TGTACATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTG
CAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTT
AATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTT
GGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGG
TTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTC
CTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGT
GTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGA
GCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTA
TTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCAT
GTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGC
AGATGTTC
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