CK739825

Overview
NameCK739825
Unique NameCK739825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig967 contig Csv1_Contig967:32..578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.373e-24
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   79 RASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            RA+DPDPLQD C+ADL++ +++NG+PCKP                            VT  DV G+P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++S+V+  G  F+IPR L+H    + +T  AT +  FN+QNP
Sbjct:   25 RANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLMHFQFNVGKTE-ATMVVSFNSQNP 184          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.623e-23
Identity = 65/165 (39.39%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   67 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P   RA+D DPLQD C+ADLN+ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+IPR L+H    + +T  AT +  FN+QNP
Sbjct:   21 PVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTE-ATMVVSFNSQNP 184          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.426e-23
Identity = 64/156 (41.03%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   73 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQ 540
            PS A DPD LQDVC+ADL +P+ +NGFPCK A+                        VT  +V  FP VNT GVS+ R+D   GG NPPHTHPR TE                    F+K +T G VF+ PR LVH         PA  I  FN+Q
Sbjct:   21 PSLAGDPDMLQDVCVADLASPVKLNGFPCK-ANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLVHFQQNR-GHGPAAVIAAFNSQ 174          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   67 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P   RA+D DPLQD C+ADL++ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+IPR L+H    + +T  AT +  FN+QNP
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTE-ATMVVSFNSQNP 186          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   67 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P   RA+D DPLQD C+ADL++ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+IPR L+H    + +T  AT +  FN+QNP
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLMHFQFNVGKTE-ATMVVSFNSQNP 186          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22
Identity = 61/158 (38.61%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   73 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            PS +SD DPLQD C+ DL A  SINGFPCK + +                      AV+  +V  FP +NT G+S+  ++   GG+NPPH+HPR TEAG+                 FSKVL  G +F++PR LVH    + +   A  I  FN+Q P
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGV-AVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVK-ARLITSFNSQLP 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.700e-22
Identity = 59/160 (36.88%), Postives = 79/160 (49.38%), Query Frame = 1
Query:   67 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            P PS A DPD LQD+C+ADL + + +NGF CK A+                    +   VT  +V   P +NT GVS+ R+D   GG+NPPHTHPR TE                    ++K ++ G VF+ PR L+H      +T PA  I  FN+Q P
Sbjct:   20 PTPSTAGDPDLLQDICVADLTSAVKVNGFACK-AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLLHFQKNNGDT-PAAVISAFNSQLP 177          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.221e-22
Identity = 63/160 (39.38%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   73 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTF--GDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            PS +SD DPLQD C+ DL A  SINGFPCK A +                       VT    +V  FP +NT G+S+  ++L  GG+NPPH HPR TE G                  FSKVL  G  F+IPR LVH    + +   A  I  FN+Q P
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSN---PNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVK-ARMITAFNSQLP 179          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.788e-22
Identity = 59/156 (37.82%), Postives = 75/156 (48.08%), Query Frame = 1
Query:   82 ASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            A DPD LQD+C+AD  + I +NGF CKP SN+                      AVT  +V     +NT GVSL R+D   GG+NPPHTHPR TE                    F+K +  G VF+ PR L+H      +  PA+ I  FN+Q P
Sbjct:   21 AYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLP 176          
BLAST of CK739825 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.788e-22
Identity = 64/160 (40.00%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   70 FPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMVFLIPRALVHLPTKMLETSPATFIPIFNTQNP 546
            F S ++DPD LQD+C+ADL + I INGFPCK A+ V                   F   VT  +V   P +NT GVSL R+D   GG+NPPHTHPR TE                     S+ L  G VF  P+ LVH   K     PA+ I  FN+Q P
Sbjct:   18 FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHF-QKNNGDVPASVIAAFNSQLP 176          
The following BLAST results are available for this feature:
BLAST of CK739825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
GL33_ORYSJ2.373e-2439.13Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ2.623e-2339.39Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL11_ORYSJ3.426e-2341.03Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ9.968e-2338.79Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ9.968e-2338.79Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GLT2_ARATH1.700e-2238.61Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL52_ORYSJ1.700e-2236.88Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH2.221e-2239.38Germin-like protein subfamily T member 1 OS=Arabid... [more]
GL24_ARATH3.788e-2237.82Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL21_ARATH3.788e-2240.00Germin-like protein subfamily 2 member 1 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6215 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739825 ID=CK739825; Name=CK739825; organism=Citrus sinensis; type=EST; length=547bp
ATGATATCTTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGAT
AGTACTACTGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTT
TACAAGACGTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGT
TTCCCCTGCAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGA
TTTTTCTAAAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACAT
TTGGTGATGTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTC
TTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCC
TCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTT
TAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATG
GTGTTCTTAATTCCTAGAGCACTGGTTCACCTTCCCACTAAAATGTTGGA
AACGAGCCCGGCCACCTTTATACCTATTTTCAATACTCAAAATCCTG
back to top