CK739837

Overview
NameCK739837
Unique NameCK739837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILN 359
            L L+ G PL+PE+ SP+   F ++F       L E + +G ++  W N QR+WM+K +TS+ YG +D I KLLGL K SF  T KV D ++ KRYE    +F +SS   V + ++ +LN
Sbjct:  540 LGLVKGTPLFPEIMSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWWNGQRMWMVKRITSYLYGFIDTIRKLLGLSKMSFEITAKVSDGDEAKRYEQEILEFGSSSPEFVIIATVALLN 658          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.967e-19
Identity = 42/120 (35.00%), Postives = 75/120 (62.50%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNV 362
            LC LNGI L+PE +SP+F+ F+++ ++A    L E +  G S   W N QR+W+I+ +TS+   ++D   ++LG+ ++ F  T KV D + ++RY+ G  +F + S   V + ++ +LN+
Sbjct:  552 LCFLNGISLFPEKTSPWFIPFAYVMVAAYSCSLAESLQCGDSAVEWWNAQRMWLIRRITSYLLATIDTFRRILGISESGFNLTVKVTDLQALERYKKGMMEFGSFSAMFVILTTVALLNL 671          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.383e-19
Identity = 45/120 (37.50%), Postives = 74/120 (61.67%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNV 362
            LCL  GIPL+P+VSS +F+ F ++ ++A    L E +  GG+   W NEQR+W+ +  +S  +G MD I KLLG+ +++F+ T KV + E  +RY+    +F   S   + + +L +LN+
Sbjct:  537 LCLFKGIPLFPKVSSSWFIPFGYVTVAATAYSLAEFLWCGGTFRGWWNEQRMWLYRRTSSFLFGFMDTIKKLLGVSESAFVITAKVAEEEAAERYKEEVMEFGVESPMFLVLGTLGMLNL 656          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 45/121 (37.19%), Postives = 75/121 (61.98%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVL-DNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNV 362
            L L++G+ ++P+ S P+F ++  +F  A  + L + +  GG+   W N+QR+ MIK ++S F+G ++ I+K L L    F  T+K   D+EQ KRYE   FDF TSS   +P+ ++ I+N+
Sbjct:  541 LALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNL 661          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILN 359
            L L+ G PL+P++ SP+   F ++F       L E + +G ++  W N QR+WM+KS+TS+ YG +D I K +G+ K SF  T KV  +++ KRYE    +F +SS   V + ++ +LN
Sbjct:  545 LGLVKGTPLFPQIMSPWATPFIYVFCVKTLYGLYEALLSGDTLKGWWNGQRMWMVKSITSYLYGFIDTIRKCVGMSKMSFEVTAKVSGHDEAKRYEQEILEFGSSSPEYVIIATVALLN 663          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 41/121 (33.88%), Postives = 74/121 (61.16%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVL-DNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNV 362
            + L++G+ ++P+ S P+F ++  +FL    + L + +  GG+   W N+QR+WM++ ++S F+G  +  +K L L    +  T+K   DNEQ+KRYE   FDF  SS   +P+ ++ I+N+
Sbjct:  531 VALIHGVSVFPKASDPWFWLYIILFLGGYAQDLSDFLLEGGTYRKWWNDQRMWMVRGLSSFFFGFTEFTLKTLNLSTQGYNVTSKSNDDNEQMKRYEQEIFDFGPSSSMFLPITTVAIMNL 651          
BLAST of CK739837 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.015e-15
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 3
Query:    3 LCLLNGIPLYPEVSSPFFMVFSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDN-EQVKRYEMGQFDFQTSSVFLVPMVSLMILNV 362
            L LL    ++P+ S P+F ++  +FL A  + L + +  GG+   W N+QR+W I+  +SH +G ++  +K L L    F  T+K  D+ EQ KRYE   F+F  SS   +P+ ++ I+N+
Sbjct:  560 LALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWWNDQRMWSIRGFSSHLFGFIEFTLKTLNLSTHGFNVTSKANDDEEQSKRYEKEIFEFGPSSSMFLPLTTVAIVNL 680          
The following BLAST results are available for this feature:
BLAST of CK739837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CSLE6_ORYSJ5.177e-2041.18Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE2_ORYSJ1.967e-1935.00Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ARATH4.383e-1937.50Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLG1_ARATH1.666e-1837.19Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLE1_ORYSJ2.841e-1837.82Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLG2_ARATH3.710e-1833.88Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG3_ARATH5.015e-1534.71Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6227 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60F05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739837 ID=CK739837; Name=CK739837; organism=Citrus sinensis; type=EST; length=364bp
AGTTGTGTCTACTAAACGGCATCCCTCTGTACCCTGAGGTTTCAAGTCCT
TTCTTCATGGTATTTTCATTCATTTTCTTATCGGCGATTTGTAAACACTT
GCAAGAGGTCATTTCAACTGGAGGTTCAGTCTATACGTGGAGAAATGAGC
AGAGAATTTGGATGATAAAGTCTGTCACATCTCATTTCTATGGAAGTATG
GATGCTATTATGAAACTTCTTGGCTTGAGGAAAGCCAGTTTCTTGCCAAC
CAACAAGGTTTTAGATAATGAACAAGTCAAAAGATATGAAATGGGCCAAT
TTGATTTTCAAACATCCTCTGTGTTTCTTGTTCCTATGGTTTCTTTGATG
ATTTTGAACGTGGC
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