CK739843

Overview
NameCK739843
Unique NameCK739843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739843 vs. ExPASy Swiss-Prot
Match: HBD_CLOTS (3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium thermosaccharolyticum GN=hbd PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.588e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 3 
Query:  327 RLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 509
            R+R T+NL+D   AD +VEA +E+ D+KK++F ELD+I K   ILASNTSS+SIT +ASAT
Sbjct:   67 RIRGTTNLEDAKEADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLSITEIASAT 127
[Close]
BLAST of CK739843 vs. ExPASy Swiss-Prot
Match: HBD_BRAJA (3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum GN=hbdA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 3 
Query:  294 ISQAVGTDAPRRLRCTSNLKDLHSADIIVEAIVESEDVKKKLFSELDKITKASAILASNTSSISITRLASAT 509
            +++   T A  R+     L DL   D+++E  VE E+VK+K+F EL  + K  AI+AS+TSSISITRLA+AT
Sbjct:   61 VTEEAKTKALSRIVAAEKLDDLADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDTSSISITRLAAAT 132
The following BLAST results are available for this feature:
BLAST of CK739843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HBD_CLOTS4.588e-1359.023-hydroxybutyryl-CoA dehydrogenase OS=Clostridium ... [more]
HBD_BRAJA7.324e-1147.223-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6233 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739843 ID=CK739843; Name=CK739843; organism=Citrus sinensis; type=EST; length=510bp
ATTGTTTGTTAGTATAATGTCATTCGGTTGGTTGCGGCTGTCGCCAAATT
TATTAGTTGAAATCTTGCTTTCTGAGAGTCTGATTTGCATTCCTCAAATG
GTAAAAACAGTTTCAGGGATTGCTTGGAAATTTTTGCAAGGATTTGGTTG
GACCATTTGTTTATATTTTTATGAGTATGCTTAACCGTTATCATCCTCTG
AATGTTGGGTAATTAAGAATTTAGCTGGTGCTCCTAGCCTGCACCACTGG
CGACCTTGTTGATTTATTAGATTGAAAAAGTTTGTCATCTTTAATTAGCC
AGGCAGTGGGTACTGATGCTCCGAGACGTCTAAGGTGTACATCAAATTTG
AAAGACCTTCATTCAGCAGATATTATAGTTGAAGCTATTGTGGAGTCTGA
AGATGTAAAGAAGAAGTTGTTTTCTGAGCTTGATAAGATTACAAAAGCTT
CTGCTATTTTGGCTTCGAATACAAGCTCCATATCTATAACTCGGTTAGCA
TCTGCGACCA
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