CK739846

Overview
NameCK739846
Unique NameCK739846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.572e-21
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K++E +PK VK+GDAA+V +IPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 KKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.665e-21
Identity = 47/59 (79.66%), Postives = 54/59 (91.53%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E +PK +KSGDAA+V ++PSKPMCVE FTEYPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  382 TGKKMEDSPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKSV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.957e-21
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   23 KELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            K+LE TPK +KSGDAAMV ++ SKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  377 KKLEDTPKMIKSGDAAMVKMVASKPMCVEAFTQYPPLGRFAVRDMRQTVAVGVIKSV 433          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.357e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K+LE  PK VKSGDAA+V ++P+KPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  381 TGKKLEENPKFVKSGDAAIVKMVPTKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.357e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K+LE +PK +K+GDAAMV  +PSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  381 TGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.315e-20
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E +PK +KSGDAA+V +IPSKPMCVE FTEYPPLGRFAVRDMRQTVAVGVIK V
Sbjct:  382 TGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.315e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K++E  PK VKSGDA++V ++PSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  381 TGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 439          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_AURPU (Elongation factor 1-alpha OS=Aureobasidium pullulans GN=TEF1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.315e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK +KSGDAA+V ++PSKPMCVE FT+YPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  380 TGKSVEAAPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSV 438          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.024e-20
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E +PK +KSGDAA+V ++PSKPMCVE FTEYPPLGRFAVRDMRQTVAVGVIK V
Sbjct:  382 TGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKV 440          
BLAST of CK739846 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.024e-20
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 2
Query:   17 TCKELEPTPKSVKSGDAAMVLLIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSV 193
            T K +E  PK VKSGDAA+V L+PSKPMCVE++ EYPPLGRFAVRDMRQTVAVGVIKSV
Sbjct:  383 TGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSV 441          
The following BLAST results are available for this feature:
BLAST of CK739846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
EF1A_ARXAD3.572e-2184.21Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_YARLI4.665e-2179.66Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_PORYE7.957e-2182.46Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_CANAL1.357e-2079.66Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A_ASHGO1.357e-2079.66Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_PODCU2.315e-2079.66Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_PICGU2.315e-2077.97Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A_AURPU2.315e-2077.97Elongation factor 1-alpha OS=Aureobasidium pullula... [more]
EF1A_PODAN3.024e-2077.97Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_PIRIN3.024e-2079.66Elongation factor 1-alpha OS=Piriformospora indica... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6236 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739846 ID=CK739846; Name=CK739846; organism=Citrus sinensis; type=EST; length=308bp
GAGAGAGACAGACGTGACATGTAAGGAGCTTGAGCCTACCCCCAAGAGCG
TCAAGTCTGGTGATGCCGCCATGGTCCTCCTCATCCCCTCCAAGCCCATG
TGCGTTGAGACCTTCACTGAATACCCCCCTCTCGGAAGATTTGCAGTCAG
AGACATGCGTCAAACCGTTGCCGTCGGTGTCATCAAGAGTGTCACCAAGA
AGGACAAGAACGCCAAGGCCACCAAGGGTGCCGCCAAGGCTGGCAAGAAG
TAAAAAACTTGCTGTTCAATAAATTATAAAAACGGTTACAACAAAAAAAA
AAAAAAAA
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