CK739851

Overview
NameCK739851
Unique NameCK739851
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739851_ssr368 microsatellite CK739851_ssr368:368..379. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig45 contig Csv1_Contig45:447..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_ARATH (Katanin p60 ATPase-containing subunit OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.065e-37
Identity = 73/85 (85.88%), Postives = 79/85 (92.94%), Query Frame = 3
Query:    3 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 257
            +VARRT+GYSGDDLTNVCRDAS+NGMRRKIAGKTRDEIKNMSKD+IS DPVAMCDFEEA+ KVQ SVS +DIEKHEKW  EFGSA
Sbjct:  439 DVARRTEGYSGDDLTNVCRDASMNGMRRKIAGKTRDEIKNMSKDDISNDPVAMCDFEEAIRKVQPSVSSSDIEKHEKWLSEFGSA 523          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_XENTR (Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.310e-22
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            +A   DGYSG D+TNVCRDASL  MRR+I G T +EI+N+S+D++   P  M DFE AL KV +SVS +DIEK+EKW +EFGS
Sbjct:  410 IAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMHM-PTTMEDFEMALKKVSKSVSASDIEKYEKWIEEFGS 491          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_CHICK (Katanin p60 ATPase-containing subunit A1 OS=Gallus gallus GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.216e-21
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            +A + +GYSG D+TNVCRDASL  MRR+I G T +EI+N+S+DE+   P  M DFE AL KV +SVS ADIEK+EKW  EFGS
Sbjct:  410 IAEKMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDEMHM-PTTMEDFEIALKKVSKSVSAADIEKYEKWIVEFGS 491          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_DANRE (Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.588e-21
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            ++A + +GYSG D+TNVCRDASL  MRR+I G T +EI+N+ KDE+   P  M DFE AL KV +SVS AD+EK+EKW  EFGS
Sbjct:  402 KIAEQMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM-PTTMEDFETALKKVSKSVSAADLEKYEKWIAEFGS 484          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.035e-21
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            +A   +GYSG D+TNVCRDASL  MRR+I G T +EI+N+SK+E+   P  M DFE AL KV +SVS ADIE++EKW  EFGS
Sbjct:  409 IAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHM-PTTMEDFEMALKKVSKSVSAADIERYEKWIFEFGS 490          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.035e-21
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            +A   +GYSG D+TNVCRDASL  MRR+I G T +EI+N+SK+E+   P  M DFE AL KV +SVS ADIE++EKW  EFGS
Sbjct:  409 IAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHM-PTTMEDFEMALKKVSKSVSAADIERYEKWIFEFGS 490          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_XENLA (Katanin p60 ATPase-containing subunit (Fragment) OS=Xenopus laevis GN=katna1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFG 251
            +A   DGYSG D+TNVCRDASL  MRR+I G T +EI+N+S+D++   P  M DFE AL KV +SVS +DIEK+EKW  EFG
Sbjct:  406 IAENMDGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSRDDMHM-PTTMEDFEMALKKVSKSVSASDIEKYEKWIFEFG 486          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_SALSA (Katanin p60 ATPase-containing subunit A1 OS=Salmo salar GN=katna1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 47/84 (55.95%), Postives = 65/84 (77.38%), Query Frame = 3
Query:    3 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            ++A +++GYSG D+TNVCRDASL  MRR+I G T +EI+N+S+ E+   P  M DFE +L KV +SVS +D+EK+EKW +EFGS
Sbjct:  403 KIAEQSEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNISRAEMHM-PTTMEDFESSLKKVSKSVSASDLEKYEKWIEEFGS 485          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.029e-20
Identity = 49/83 (59.04%), Postives = 62/83 (74.70%), Query Frame = 3
Query:    6 VARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGS 254
            +A   +GYSG D+TNVCRDASL  MRR+I G T +EI+N+S++E+   P  M DFE AL KV +SVS ADIE++EKW  EFGS
Sbjct:  409 IAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHM-PTTMEDFEMALKKVSKSVSAADIERYEKWIVEFGS 490          
BLAST of CK739851 vs. ExPASy Swiss-Prot
Match: KATL1_RABIT (Katanin p60 ATPase-containing subunit A-like 1 OS=Oryctolagus cuniculus GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.293e-20
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 3
Query:    3 EVARRTDGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALTKVQRSVSQADIEKHEKWFQEFGSA 257
            ++A + +GYSG D+TNVCRDASL  MRR+I G + +EI+ +SK+E+   PV   DFE AL K+ +SVS AD+EK+EKW  EFGSA
Sbjct:  407 DIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDFELALKKIAKSVSAADLEKYEKWMVEFGSA 490          
The following BLAST results are available for this feature:
BLAST of CK739851 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
KTNA1_ARATH2.065e-3785.88Katanin p60 ATPase-containing subunit OS=Arabidops... [more]
KTNA1_XENTR9.310e-2260.24Katanin p60 ATPase-containing subunit A1 OS=Xenopu... [more]
KTNA1_CHICK1.216e-2161.45Katanin p60 ATPase-containing subunit A1 OS=Gallus... [more]
KTNA1_DANRE1.588e-2159.52Katanin p60 ATPase-containing subunit A1 OS=Danio ... [more]
KTNA1_MACFA6.035e-2160.24Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN6.035e-2160.24Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
KTNA1_XENLA1.029e-2059.76Katanin p60 ATPase-containing subunit (Fragment) O... [more]
KTNA1_SALSA1.029e-2055.95Katanin p60 ATPase-containing subunit A1 OS=Salmo ... [more]
KTNA1_RAT1.029e-2059.04Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KATL1_RABIT2.293e-2056.47Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6241 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739851 ID=CK739851; Name=CK739851; organism=Citrus sinensis; type=EST; length=463bp
ATGAAGTGGCTCGCCGAACGGATGGATACAGTGGAGACGATCTGACAAAC
GTTTGCCGTGATGCCTCTTTGAATGGCATGAGACGTAAAATAGCTGGAAA
AACTCGCGACGAGATTAAGAACATGTCCAAGGATGAGATTTCAAAAGACC
CTGTTGCCATGTGTGACTTTGAGGAGGCCTTGACGAAGGTACAGCGAAGT
GTATCCCAAGCTGATATCGAAAAGCATGAGAAATGGTTTCAAGAATTCGG
ATCAGCATAAGAAGGTGGCAGAAAGCAATATCAAAGATGATGCATTTTTT
GTTGTCTTGATGTTCGTCTGCCTGCCGGGTGATTGTTTGTAATGTTTTTC
CTGCTGTTTCACTTGTGTGATTGATTGATTGAGCTATTTTGAACAAGCCT
GTTGCTAATGTCTGTGTCACTTTCCATTTTTAACCTCACCTTATGTAATG
TAATATGGAGTTT
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